FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2245199
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG65400.29128821097818053No Hit
CAATTT52480.23374320049135955No Hit
GTGGGG44990.20038312862245172No Hit
GGGGTG44250.1970872069691818No Hit
GGGGGT41510.18488338895572284No Hit
GGGTGG39130.17428299228709793No Hit
GGTGGG37740.16809200431676657No Hit
TGGGGG35760.15927318692017944No Hit
CGGGGG33740.15027621159638854No Hit
GGGGCG32520.14484239481667327No Hit
AGGGGG31790.1415910126452043No Hit
GGCGGG30570.136157195865489No Hit
GGGAGG29780.13263857680321434No Hit
GGGGAG29730.1324158793942096No Hit
GTGGTG29590.13179232664899637No Hit
GCGGGG29020.1292535761863425No Hit
GTTGGG28580.12729383898710092No Hit
GGGTTG28270.12591311505127162No Hit
GGGGGC28220.12569041764226688No Hit
GGGCGG28200.12560133867866502No Hit
GGTGGT28080.12506686489705368No Hit
GGGGGA28030.12484416748804894No Hit
TTGGGG27300.12159278531657997No Hit
GAGGGG26990.12021206138075066No Hit
GGGGTT26980.12016752189894972No Hit
GGGTGT26760.11918765329932891No Hit
TGTGGG26680.11883133744492137No Hit
GGAGGG26380.11749515299089301No Hit
GTGGGT25690.11442192874662781No Hit
GTGTGG25210.11228403362018244No Hit
TGGTGG25080.11170502035677016No Hit
TGGGGT24920.11099238864795505No Hit
GGTGTG24780.11036883590274181No Hit
GTCGGG24410.10872087507610684No Hit
AGTGGG24170.10765192751288416No Hit
AGGTGG23980.10680567735866621No Hit
ATGGGG23360.10404422948700762No Hit
GTGGCG23140.10306436088738681No Hit
GGTTGG23100.10288620296018305No Hit
GTAGGG23070.1027525845147802No Hit
GGGAGT22940.1021735712513679No Hit
TGGGTG22770.10141640006075185No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)