FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3481667
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG224120.6437146343978329No Hit
GGGGGT125100.3593106405638449No Hit
GTGGGG117830.33842983835042234No Hit
TGGGGG116450.3344662197734591No Hit
GGGTGG104130.29908087131825073No Hit
GGTGGG99500.28578264377380147No Hit
GGGGTG97800.28089992523696267No Hit
CGGGGG91970.2641550728429801No Hit
GCGGGG85810.2464623986153759No Hit
AGGGGG85700.2461464580041687No Hit
GGCGGG83370.23945426142132492No Hit
GGGGGA82200.23609380219302994No Hit
GGGGCG80260.2305217586862845No Hit
GAGGGG78380.22512204642201566No Hit
GGGCGG78310.2249209933057929No Hit
GGGAGG75550.21699375615186633No Hit
GGGGGC75540.21696503427812022No Hit
GGAGGG74020.21259930946871142No Hit
GGGGAG73410.21084727517019863No Hit
GGGGTT68500.1967448351608583No Hit
GTGGGT65880.18921970423937728No Hit
GGGTGT63340.18192434830786516No Hit
TTGGGG63220.18157968582291184No Hit
GTGTGG62530.1795978765344302No Hit
GGTGGT58790.1688558957533848No Hit
GGGTTG58570.16822401453097038No Hit
GTTGGG57990.16655814585369594No Hit
TGGTGG57970.1665007021062037No Hit
GGTTGG56780.16308279913041657No Hit
TGGGTG52210.14995690282844396No Hit
GTGGTG51840.14889419349983785No Hit
GTCGGG50900.14619433736770346No Hit
CTGGGG50690.14559117801903515No Hit
TGGGGT50470.1449592967966207No Hit
GGCTGG49530.1422594406644863No Hit
TCGGGG49450.1420296656745174No Hit
TGTGGG49370.1417998906845485No Hit
AGGTGG48570.13950214078485967No Hit
ATGGGG47830.13737672212764748No Hit
CGGTGG47800.13729055650640914No Hit
GGTGTG47770.1372043908851708No Hit
AGGGGT47370.1360555159353264No Hit
GGGGCT47200.1355672440816425No Hit
GGGTAG46390.13324077230820755No Hit
GTGCGG46090.1323791160958242No Hit
GTAGGG45910.1318621223683942No Hit
GTGGCG45670.13117279739848756No Hit
TGGGGA44740.12850166314009925No Hit
GGGCGT44700.12838677564511483No Hit
GCGGGT44520.12786978191768483No Hit
GTGGAG44230.12703684757904762No Hit
CGGGGT43950.12623263511415653No Hit
GGGCTG43750.1256581976392343No Hit
GGGGTA43680.12545714452301152No Hit
GGGGAT43450.12479654142685098No Hit
GAGGGT43260.12425082582567488No Hit
GGCGGT43130.12387744146697545No Hit
TGGGGC43020.12356150085576824No Hit
TGCGGG42780.12287217588586158No Hit
GGGTCG42710.12267112276963879No Hit
GTGAGG42200.12120630720858716No Hit
TAGGGG41670.11968404790004329No Hit
GTGGGA40780.11712780113663944No Hit
GGATGG40120.11523215746939612No Hit
GGAGGT40050.11503110435317336No Hit
GTGTTG40030.11497366060568112No Hit
GGGTGA39920.11465771999447391No Hit
GGGATG39830.11439922313075891No Hit
AGGGTG39810.1143417793832667No Hit
GGTGAG39370.11307801693843783No Hit
GGGTTT39360.11304929506469172No Hit
GGTCGG39350.1130205731909456No Hit
GTGGGC39210.11261846695850004No Hit
TGAGGG39180.11253230133726172No Hit
TGGGCG39120.11235997009478506No Hit
GGTGGA39080.11224508259980062No Hit
GCGTGG38980.1119578638623395No Hit
GGGGTC38930.11181425449360895No Hit
GCTGGG38850.11158447950364006No Hit
GAGTGG38660.11103876390246396No Hit
GGTGGC38590.11083771078624119No Hit
GGCCGG38550.11072282329125675No Hit
TGGCGG38340.11011966394258843No Hit
GTGTGT38250.10986116707887342No Hit
AGTGGG38090.10940161709893566No Hit
GGTAGG37850.108712292129029No Hit
GAGGTG37650.10813785465410679No Hit
CGTGGG37490.10767830467416901No Hit
GGGTGC37460.10759213905293069No Hit
GGTTGT37160.10673048284054736No Hit
GGAGTG36590.10509333603701905No Hit
TTGGGT36520.10489228292079628No Hit
GGCGTG36430.10463378605708128No Hit
GGGGCA36300.10426040169838184No Hit
CGGGTG36260.10414551420339739No Hit
GGTGCG36180.1039157392134285No Hit
GCCGGG35930.10319769236977573No Hit
GGTTTG35730.10262325489485352No Hit
CCGGGG35400.10167543306123186No Hit
GTTGGT35370.10158926743999354No Hit
CAGGGG35330.1014743799450091No Hit
GGGAGT35080.10075633310135633No Hit
GGGCAG35000.10052655811138744No Hit
GTGGTT34910.10026806124767244No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)