FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4510176
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG196090.4347723902570543No Hit
GGGGGT105930.23486888316553498No Hit
GTGGGG104320.2312991776817579No Hit
GGGTGG99880.22145477249668305No Hit
GGGGTG99090.21970317788041974No Hit
GGTGGG98530.21846154119041034No Hit
TGGGGG94540.20961487977409304No Hit
GGGGCG87990.19509216491773268No Hit
GGGCGG86160.19103467359145185No Hit
GCGGGG85290.1891057023051872No Hit
GGGGGC80830.17921695295261206No Hit
AGGGGG79940.17724363749884706No Hit
GAGGGG77500.17183364906380594No Hit
GGGGAG75720.16788701815627594No Hit
GGGAGG75290.1669336185550187No Hit
CGGGGG75250.16684493022001803No Hit
GGAGGG71100.1576435154636981No Hit
GGCGGG70140.1555149954236819No Hit
GGGGGA69800.15476114457617618No Hit
GGGTTG67660.15001631865364012No Hit
GTGTGG66100.14655747358861385No Hit
GTGGTG63030.13975064387731212No Hit
TTGGGG61160.1356044642160306No Hit
GGTTGG61100.13547143171352957No Hit
GGTGGT59200.13125873580099756No Hit
GTTGGG57710.12795509532222246No Hit
GGGGTT56280.12478448734594837No Hit
GTGGGT55900.12394194816344195No Hit
GGTGTG55030.1220129768771773No Hit
TGGGGT55010.12196863270967696No Hit
TGGTGG54960.1218577722909261No Hit
GGGTGT54450.12072699601966752No Hit
TGTGGG54100.11995097308841163No Hit
GGAGTG53570.11877585264965271No Hit
GGGGTA52480.11635909552088433No Hit
GTCGGG52230.11580479342713011No Hit
GTAGGG52210.11576044925962978No Hit
GGGGCT50750.11252332503210519No Hit
GGGTAG50700.11241246461335434No Hit
TGGGTG49930.11070521416459136No Hit
GGCTGG49800.11041697707583917No Hit
GTGGCG49770.11035046082458866No Hit
TGCAAT49000.10864321037582568No Hit
CTGGGG48990.10862103829207552No Hit
GTGCGG48540.10762329452331794No Hit
GGTCGG48080.1066033786708102No Hit
GGTGCG48010.106448174084559No Hit
AGTGGG47560.10545043031580142No Hit
GGGTCG47050.10431965404454284No Hit
GGGCTG46510.10312236152203373No Hit
GGTAGG46470.10303367318703306No Hit
GGATGG46400.10287846860078187No Hit
GCTGGG45950.10188072483202429No Hit
AGGGTG45770.10148162732452126No Hit
AGGGGT45600.10110470190076841No Hit
GTTTGG45590.10108252981701822No Hit
GGAGGT45570.10103818564951789No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)