FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3675973
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG127560.34701016574387245No Hit
GGGGGT72300.19668261981249593No Hit
GTGGGG68200.18552911025189794No Hit
GGGTGG67640.18400570406801137No Hit
TGGGGG67520.18367925988574996No Hit
GGTGGG66870.18191102056516736No Hit
AGGGGG62960.17127438095981662No Hit
GGCGGG60160.16365735004038387No Hit
GGGGGC59380.16153546285568474No Hit
GGGGCG58020.15783576212338882No Hit
GGAGGG57330.15595870807538575No Hit
GGGCGG57060.1552242086652976No Hit
GGGGTG56910.15481615343747085No Hit
CGGGGG55280.15038195329508677No Hit
GAGGGG50940.138575555369966No Hit
GGGGGA49980.13596400191187477No Hit
GGGGAG49300.1341141515457268No Hit
GCGGGG48740.13259074536184023No Hit
GGGAGG48130.1309313207686781No Hit
GGGTGT46670.12695958321783102No Hit
GGGTTG46530.1265787316718594No Hit
GTGGGT44250.12037629220889273No Hit
GTGTGG42220.11485394479230397No Hit
GTTGGG40990.11150789192412458No Hit
GTCGGG40560.11033813360435454No Hit
GGGGTT40520.11022931887693407No Hit
TTGGGG40110.1091139679208743No Hit
GTAGGG39630.10780819119182866No Hit
GGTGTG38650.10514223037002719No Hit
AGGGGT38360.1043533235962288No Hit
TGTGGG37860.10299313950347296No Hit
TGGGGT37660.1024490658663706No Hit
GGTTGG37650.10242186218451549No Hit
GGTGGT37510.10204101063854387No Hit
TAGGGG37460.10190499222926827No Hit
TGGGTG37060.10081684495506359No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)