FastQCFastQC Report
Wed 8 May 2024
EGAF00005483073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2562997
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG73150.2854080593929685No Hit
GGTGGG51790.202068125713764No Hit
GGCGGG44740.1745612655808805No Hit
GGGGTG44170.17233730667651972No Hit
GGGTGG43640.170269415063693No Hit
GGGTTG37810.14752260732259928No Hit
GGAGGG37700.14709342227088054No Hit
TGGGGG37180.14506454748093736No Hit
GAGGGG36290.14159205024430382No Hit
GGGGGA35910.14010941097472995No Hit
AGGGGG35200.13733921654999987No Hit
GTGGGG35020.13663691373809644No Hit
GGGGCG34320.13390573613624987No Hit
GGGCGG34310.13386671931336633No Hit
GGGGGT33990.13261818098109363No Hit
GTTGGG33200.1295358519732953No Hit
GCGGGG32960.12859944822409078No Hit
GGTGGT31230.12184953786524134No Hit
GGTTGG30430.11872819203455955No Hit
GGTGTG30000.11705046865056806No Hit
GTGTGG28690.11193926485282658No Hit
GGGGGC28210.11006645735441749No Hit
GTGGTG27980.1091690704280965No Hit
GGGTCG27940.1090130031365624No Hit
CGGGGG27550.10749134704410501No Hit
GTAGGG26510.10343359746421865No Hit
GGGTAG26290.10257522736078116No Hit
TAGGGG25980.10136570585139194No Hit
GGGGTA25800.10066340303948854No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)