FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4667287
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG364310.7805605269185288No Hit
GGGTGG167950.3598450234579532No Hit
GGGGGT162590.3483608357489051No Hit
TGGGGG152900.32759930983459984No Hit
AGGGGG150410.32226430472349354No Hit
GGGGTG145390.3115085916079298No Hit
GTGGGG145160.31101579997116097No Hit
GGTGGG135320.2899328882067891No Hit
GGGGGA129000.27639183105731446No Hit
GGAGGG125930.2698141339926171No Hit
CGGGGG122900.2633221398212709No Hit
GGGAGG120890.2590155694303779No Hit
GGGGAG120530.25824424339021795No Hit
GAGGGG119670.25640163118316917No Hit
GGGGGC118690.2543019102960671No Hit
GGCGGG116770.25018817141521404No Hit
GGGGCG113350.24286057403369454No Hit
GGGCGG113330.24281772258701897No Hit
GCGGGG111920.23979669559639252No Hit
GGGTGT81270.1741268535661081No Hit
GGGGTT78200.16754915650141078No Hit
GGGTTG77010.16499949542421538No Hit
GGTGGT75750.16229985428365556No Hit
GTGTGG75000.16069292503332236No Hit
GGTTGG74800.16026441056656685No Hit
GGGGTA72670.15570073149562047No Hit
TGGGGT72610.15557217715559382No Hit
TTGGGG70430.15090136946795857No Hit
AGGGGT70150.15030144921450084No Hit
AGGTGG68740.14728042222387439No Hit
GGTGTG68630.14704473926715886No Hit
TAGGGG68230.1461877103336478No Hit
TGGGTG68170.14605915599362113No Hit
TGTGGG68000.14569491869687892No Hit
TGGTGG67600.1448378897633679No Hit
GGGTAG67110.14378802931981685No Hit
GGATGG66970.14348806919308796No Hit
GTGGGT65400.14012423062905707No Hit
GTTGGG64910.13907437018550606No Hit
GGGTGA64280.13772454961522615No Hit
GTGGTG64240.13763884672187504No Hit
GGAAGG64220.1375959952751995No Hit
GGCTGG63820.13673896634168844No Hit
GTAGGG63030.1350463341980041No Hit
TGAGGG63020.13502490847466633No Hit
GGGGAT62730.13440356249787083No Hit
AGGGTG62560.13403932520112863No Hit
ATGGGG62540.1339964737544531No Hit
AGTGGG62250.13337512777765756No Hit
GGAGGT61860.13253952456748427No Hit
GGGGCT60350.12930424034348006No Hit
AAGGGG59650.1278044397098357No Hit
GGTGGA59620.1277401625398224No Hit
GGTAGG59580.1276544596464713No Hit
GGGATG58650.12566186737605808No Hit
GAGTGG57980.12422634391242708No Hit
TGGGGA57840.12392638378569819No Hit
GAGGGT57040.12221232591867609No Hit
GGGAAG56990.12210519730198721No Hit
TGGAGG56480.12101248541176061No Hit
GGGGAA56330.12069109956169399No Hit
TGGCGG56240.12049826805165399No Hit
GGCGGT56180.12036971371162733No Hit
CGGGGT56010.12000547641488513No Hit
TGCGGG54660.11711300376428532No Hit
GTGAGG54630.11704872659427201No Hit
GGGAGT54610.11700587514759644No Hit
GTGGGA54330.11640595489413871No Hit
GAAGGG54310.11636310344746315No Hit
GAGGTG53980.11565605457731654No Hit
TCGGGG53480.11458476841042774No Hit
GTCGGG53360.11432765973037441No Hit
GATGGG53310.11422053111368553No Hit
GGCAGG53310.11422053111368553No Hit
GGTGAG52880.11329922501016115No Hit
GGAGGA52530.11254932469333898No Hit
GGGGTC52440.112356493183299No Hit
AGAGGG52380.11222793884327234No Hit
GGAGTG52330.11212081022658345No Hit
GGGTGC52060.1115423156964635No Hit
GTGGCG51600.11055673242292578No Hit
TGGGAG51570.11049245525291244No Hit
GGAGAG51510.11036390091288578No Hit
GGTCGG51400.11012821795617025No Hit
GTGGAG51370.11006394078615692No Hit
GGGCAG51360.11004251506281915No Hit
AGGGGA51220.10974255493609028No Hit
AGCGGG51000.1092711890226592No Hit
GCGGGT50920.109099783235957No Hit
GGGCGT50490.10817847713243262No Hit
GGGGCA49900.1069143594555038No Hit
ACGGGG49870.10685008228549049No Hit
TGGGCG49840.10678580511547715No Hit
AGGAGG49770.10663582505211272No Hit
GGGTCG49620.10631443920204606No Hit
GTGCGG49580.10622873630869498No Hit
CGTGGG49550.10616445913868162No Hit
TGGGGC49430.10590735045862831No Hit
GCGTGG49380.10580022184193945No Hit
CGGTGG49150.10530743020517058No Hit
AGGGAG49120.10524315303515724No Hit
CGAGGG48900.10477178712172619No Hit
GAGAGG48550.10402188680490401No Hit
GGTGGC48500.10391475818821512No Hit
CAGGGG48300.1034862437214596No Hit
GGGCTG48040.10292917491467743No Hit
GGCCGG47610.10200786881115302No Hit
GCAGGG47590.10196501736447748No Hit
GGGAGA47390.10153650289772195No Hit
CGGGTG47190.10110798843096644No Hit
AGGGGC47000.10070089968754867No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)