FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3664269
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT287890.7856683010990733No Hit
GGGGGG133010.36299190916387414No Hit
GGGGGT78420.2140126721045862No Hit
GGGTGG72970.19913930991420115No Hit
GTGGGG71150.19417242565979734No Hit
TGGGGG67760.1849209214716496No Hit
GGGGTG64350.17561483613784903No Hit
AGGGGG64140.17504173410849477No Hit
GGCGGG63800.17411385463239734No Hit
CGGGGG62300.17002026870843817No Hit
GGTGGG61520.1678916040279794No Hit
GGGGGA60270.16448028242468007No Hit
GGGGCG58810.16049585879202646No Hit
GGGCGG58060.15844906583004686No Hit
GGGGGC57650.1573301523441647No Hit
GGGAGG55260.15080770543865638No Hit
GCGGGG54240.14802406701036414No Hit
GGGGAG53500.14600456462121095No Hit
GGAGGG52660.14371215650379382No Hit
GAGGGG52560.14343925077552985No Hit
GTGTGG49060.13388755028629176No Hit
GGGTGT46150.12594599359381095No Hit
TGGGGT45410.12392649120465772No Hit
GGGGTT45240.12346255146660903No Hit
GTGGTG41630.11361065467628058No Hit
GTGGGT41080.11210967317082889No Hit
CGGTGG40970.11180947686973855No Hit
GTTGGG40160.1095989404708006No Hit
TGGGTG39870.10880751385883515No Hit
ATGGGG39740.10845273641209201No Hit
AGGTGG38580.10528702996423026No Hit
GGTGGT38370.10471392793487595No Hit
GGGTTG38250.10438644106095922No Hit
TTGGGG38030.10378604845877855No Hit
ATCTCG37940.10354043330334098No Hit
GGTGTG37900.10343127101203542No Hit
TGGTGG37870.10334939929355623No Hit
AGGGGT37690.10285816898268113No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)