FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2786138
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG110210.39556547450269874No Hit
GTGGGG60050.21553131969773215No Hit
GGGTGG56640.20329215566493833No Hit
GGGGGT54820.1967598159172302No Hit
GGGGTG53680.19266813058075372No Hit
GGCGGG53060.19044282802933668No Hit
TGGGGG50230.1802853986414169No Hit
GGTGGG49970.17935220724888717No Hit
GGGCGG47010.16872818216470256No Hit
GGAGGG46320.1662516357768352No Hit
GGGGGC46170.16571325612729879No Hit
GCGGGG45000.16151389486091502No Hit
CGGGGG44950.1613344349777362No Hit
GGGGCG44680.1603653516085707No Hit
GGGAGG44640.1602217837020277No Hit
AGGGGG43840.15735042557116696No Hit
GAGGGG43000.15433549953376322No Hit
GGGGGA39000.13997870887945968No Hit
GGGTGT38040.1365330791224268No Hit
GGGGAG37830.1357793476130759No Hit
GGTGGT36180.12985717146817566No Hit
GTGTGG35680.1280625726363877No Hit
TTGGGG35470.12730884112703678No Hit
GGTTGG33600.12059704149614987No Hit
GGCCGG33320.11959206615034862No Hit
GTAGGG33310.11955617417371286No Hit
GTTGGG33210.11919725440735526No Hit
GTCGGG32150.11539270488396483No Hit
GGGGTT32130.11532092093069332No Hit
GTGGGT31960.11471075732788541No Hit
TGTGGG31190.11194707512693197No Hit
GGCGGT30820.1106190719914089No Hit
TGGGGT30390.10907571699607127No Hit
GGTGTG29900.10731701014091907No Hit
ATGGGG29770.10685041444465421No Hit
GTGCGG29560.10609668293530329No Hit
GCTGGG28990.10405084026706501No Hit
TGCGGG28940.10387138038388621No Hit
TGGTGG28750.10318943282780682No Hit
GGGTTG28290.1015384019025619No Hit
GGGGCT28280.10150250992592613No Hit
GGATGG28050.10067699446330368No Hit
CTGGGG27970.1003898586502176No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)