FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3702326
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG94540.2553529862038081No Hit
GTGGGG61310.16559859936699253No Hit
GGGGGT60610.1637078960631776No Hit
GGTGGG56270.15198553557952488No Hit
GGGGTG54590.14744784765036897No Hit
GGGTGG54220.14644847590406682No Hit
GGCGGG49930.13486116565640086No Hit
TGGGGG49900.1347801355148088No Hit
CGGGGG48830.13189006046469165No Hit
GCGGGG47820.12916204569775866No Hit
TGCAAT46950.12681217159158864No Hit
GGGGCG45030.1216262425296962No Hit
GGAGGG44890.1212481018689332No Hit
GGGGGC44410.1199516196034601No Hit
GGGCGG43850.11843905696040813No Hit
AGGGGG43750.11816895648843458No Hit
GGGGAG40650.10979584185725405No Hit
GGGGTT40350.10898554044133336No Hit
GTGGTG40020.1080942088838206No Hit
GTTGGG39520.10674370652395278No Hit
GTGTGG38950.10520413383370347No Hit
TTGGGG38730.10460991279536162No Hit
GGGGGA38670.10444785251217747No Hit
GGTGGT38640.10436682237058542No Hit
GGTTGG38490.10396167166262507No Hit
GAGGGG38440.10382662142663827No Hit
GTGGGT38400.10371858123784886No Hit
GGGTGT37040.10004521481900837No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)