FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4552628
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG209600.4603934255115946No Hit
CGGGGG102260.22461751761839538No Hit
GGGTGG101010.22187185072006763No Hit
TGGGGG99520.21859901577726099No Hit
GTGGGG96820.21266837527687305No Hit
AGGGGG96040.21095507913231654No Hit
GGGCGG93820.20607877472088648No Hit
GGGGGT89250.1960406165406003No Hit
GGAGGG89060.19562327517205447No Hit
GGGGCG88100.19351460299413878No Hit
GGTGGG87150.1914278961514097No Hit
GGGGGA86100.18912153595681439No Hit
GGCGGG86100.18912153595681439No Hit
GGGGAG85730.18830881855490939No Hit
GGGAGG85530.18786951185117695No Hit
GGGGGC84540.1856949436677014No Hit
GAGGGG81950.1800059218543663No Hit
GGGGTG63690.13989721980359476No Hit
GGGTGT56220.12348911441918821No Hit
GTGTGG55170.1211827542245929No Hit
GCGGGG54130.11889835936518423No Hit
ATGGGG52640.11562552442237758No Hit
CTGGGG52420.1151422870482719No Hit
CCGGGG52330.1149445990315923No Hit
TTGGGG51450.11301164953516957No Hit
GTTGGG51080.11219893213326457No Hit
GGGCCG50370.11063939333501441No Hit
GGCCGG50350.11059546266464118No Hit
CGGCGG49870.10954112657568331No Hit
GGGGAT49530.10879430517933818No Hit
GGTGGT49190.10804748378299303No Hit
CGGTGG49180.10802551844780642No Hit
GTAGGG48860.10732262772183451No Hit
GGTTGG48400.10631222230324991No Hit
AGGGGT48310.10611453428657032No Hit
GGGGCA47930.10527985154947868No Hit
AGGTGG47790.10497233685686598No Hit
GGGTAG47740.10486251018093286No Hit
CGGGGT47620.1045989261586934No Hit
GTCGGG47620.1045989261586934No Hit
GGACGG47150.10356655540492217No Hit
CAGGGG47110.10347869406417567No Hit
CGGGCG47010.10325904071230947No Hit
GGGGCT46710.10260008065671081No Hit
AAGGGG46670.10251221931596433No Hit
GGGTTG46670.10251221931596433No Hit
TGGGGT46450.10202898194185864No Hit
GGCAGG46400.10191915526592552No Hit
TGTGGG46240.10156770990293958No Hit
TGGGGC46230.10154574456775296No Hit
TAGGGG46120.10130412588070012No Hit
GGCTGG46080.10121626453995364No Hit
GGGTCG46020.1010844725288339No Hit
TGGTGG45830.10066713116028808No Hit
GGGCGT45570.10009603244543591No Hit
CGGGAG45540.10003013643987604No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)