FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11356100
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1185841.0442317344863112No Hit
GTGGGG531330.4678806984792314No Hit
GGGTGG488010.4297337994557991No Hit
GGGGTG474600.41792516797139867No Hit
GGGGGT458910.40410880495944906No Hit
TGGGGG457910.40322822095613814No Hit
GGTGGG442090.38929738202375813No Hit
AGGGGG415330.36573295409515594No Hit
CGGGGG402130.35410924525145077No Hit
GAGGGG385940.33985259023784575No Hit
GGGGAG385370.33935065735595843No Hit
GCGGGG379760.3344105810973838No Hit
GGCGGG369660.32551668266394274No Hit
GGGGCG369140.32505877898222096No Hit
GGAGGG368640.3246184869805655No Hit
GGGCGG355220.3128010496561319No Hit
GGGAGG349400.30767605075686194No Hit
GGGGGA322960.2843934097093192No Hit
TTGGGG243830.21471279752732012No Hit
GTGTGG243360.21429892304576395No Hit
GTGGTG237600.20922675918669262No Hit
GGGTGT232270.204533246449045No Hit
TGGTGG228440.2011606097163639No Hit
GTTGGG221050.19465309393189564No Hit
GGGTTG220140.19385176248888264No Hit
TGGGGT213910.18836572414825511No Hit
GTGGGT213020.18758200438530834No Hit
GGTTGG212880.1874587226248448No Hit
GGTGGT206590.18191984924401863No Hit
GGTGTG203980.17962152499537692No Hit
TGTGGG202960.17872332931199972No Hit
CTGGGG202650.1784503482709733No Hit
ATGGGG201330.1772879773866028No Hit
GGGGTT200620.176662762744252No Hit
AGGTGG200620.176662762744252No Hit
AGGGTG193860.17071001488186965No Hit
TGGGTG193300.17021688784001549No Hit
TAGGGG191290.1684469139933604No Hit
GGGTAG190370.16763677671031427No Hit
GTGGAG190340.16761035919021494No Hit
GTCGGG189750.16709081462826145No Hit
GGGGGC189370.1667561927070033No Hit
AGTGGG180690.15911272355826384No Hit
GGCTGG177810.15657664162872817No Hit
AGGGGT177110.15596023282641047No Hit
GGATGG176540.15545829994452323No Hit
TCGGGG176210.15516770722343057No Hit
GGGATG175260.15433115242028514No Hit
GGGGTA175110.15419906481978848No Hit
CGGGTG174560.15371474361796744No Hit
CGGGGT174110.15331848081647748No Hit
GTGGCG174070.15328325745634505No Hit
GGGCTG173050.15238506177296784No Hit
GAGTGG172140.15158373032995484No Hit
TGGAGG171400.1509320981675047No Hit
GTAGGG170310.1499722616038957No Hit
CGGTGG170310.1499722616038957No Hit
TGAGGG169930.14963763968263752No Hit
GTGAGG169790.149514357922174No Hit
AAGGGG169440.14920615352101513No Hit
GTGCGG167430.14743617967436004No Hit
TGCGGG167390.1474009563142276No Hit
GAGGGT166580.1466876832715457No Hit
CAGGGG166210.1463618671903206No Hit
GCGGTG165280.1455429240672414No Hit
TGGCGG163290.1437905619006525No Hit
GGGGAT163000.14353519253969232No Hit
CGTGGG163000.14353519253969232No Hit
GAGGTG161920.14258416181611647No Hit
GTGGGA161870.14254013261595092No Hit
ACGGGG161420.14214386981446095No Hit
GGGGCT160890.1416771602927061No Hit
GGTGAG159980.14087582884969313No Hit
GCTGGG159790.14070851788906402No Hit
GGTCGG159670.14060284780866672No Hit
AGCGGG159000.14001285652644835No Hit
GCGTGG158630.13968704044522326No Hit
TGGGAG158550.13961659372495838No Hit
GGGTGA157520.13870959220154808No Hit
GGGCCG155630.1370452884352903No Hit
GCGGGT154550.1360942577117144No Hit
GATGGG154370.13593575259111843No Hit
GGTAGG153940.1355571014696947No Hit
GGGTCG153440.1351168094680392No Hit
GGGCGT153310.13500233354760877No Hit
GGCCGG152590.13436831306522487No Hit
TGGGCG151250.13318833050078813No Hit
GGAGGT150700.13270400929896706No Hit
GGAGTG150680.13268639761890086No Hit
GGCGGT150440.13247505745810623No Hit
GGTGGA149080.13127746321360326No Hit
TGGGGA147310.1297188295277428No Hit
GGAAGG146380.12889988640466357No Hit
GGCAGG145160.12782557392062416No Hit
GGGCAG144610.12734125271880312No Hit
GAAGGG144590.1273236410387369No Hit
GGCGTG142990.1259147066334393No Hit
GGGAGT142890.1258266482331082No Hit
CGCGGG142150.12517501607065806No Hit
GGGAAG140850.12403025686635377No Hit
GGTGCG140020.12329937214360565No Hit
AGGCGG139230.12260371078098996No Hit
GCAGGG139080.12247162318049329No Hit
GGCGCG136000.11975942445029543No Hit
AGAGGG135690.11948644340926903No Hit
GCGCGG134040.1180334798038059No Hit
CCGGGG133190.11728498340099153No Hit
GGGGCA131160.11549739787427023No Hit
GACGGG130790.11517158179304514No Hit
AGGGAG130610.11501307667244917No Hit
GAGGAG130110.11457278467079367No Hit
GCCGGG129320.11387712330817798No Hit
AGGGGA128100.11280281082413858No Hit
CGGAGG127040.11186939178062891No Hit
CGAGGG126710.1115787990595363No Hit
AGGGCG126620.11149954649923828No Hit
GGGACG126220.1111473128979139No Hit
GGACGG125830.11080388513662259No Hit
GAGGGA124920.1100025536936096No Hit
GCGAGG124780.10987927193314606No Hit
CGGCGG124530.10965912593231832No Hit
GAGAGG124300.10945659161155678No Hit
TGGTTG123230.10851436672801403No Hit
GGGGAA123090.10839108496755048No Hit
GTGTTG122550.10791556960576254No Hit
AGGAGG122550.10791556960576254No Hit
GAGCGG122450.10782751120543145No Hit
CGGGGA121790.10724632576324619No Hit
TTGTGG121700.1071670732029482No Hit
GCGGGA119480.1052121767155978No Hit
GAGGCG119120.10489516647440582No Hit
GGCGAG118940.10473666135380985No Hit
GGAGAG118340.10420831095182324No Hit
CGGGCG118070.10397055327092929No Hit
GTGGTT116900.10294026998705541No Hit
GCGGAG116000.10214774438407552No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)