FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13847649
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG626680.4525533540025458No Hit
GTGGGG350020.25276492782276616No Hit
GGGGGT337690.24386088931052483No Hit
GGGTGG333700.24097953378223264No Hit
GGGGTG323460.23358477673719197No Hit
TGGGGG317610.22936023291751545No Hit
GGTGGG304020.21954629265949765No Hit
GGCGGG254650.18389403139839838No Hit
GGGCGG242990.17547382952875248No Hit
AGGGGG241310.1742606272010505No Hit
GCGGGG239030.1726141383277407No Hit
CGGGGG236570.1708376634907485No Hit
GGGGGC236380.17070045608463935No Hit
GAGGGG235270.16989887597526482No Hit
GGGGCG234310.16920561750229227No Hit
GGAGGG231630.16727027093191052No Hit
GGGGGA231390.1670969563136674No Hit
GTGTGG227780.1644900155975935No Hit
GGGGAG224380.16203472517248235No Hit
GGGAGG222570.16072764409323198No Hit
GTGGGT214490.1548927186123796No Hit
GGGTTG206090.1488267069738697No Hit
GTTGGG206080.14881948553144292No Hit
GTGGTG205460.1483717561009815No Hit
GGGGTT201840.14575759394248078No Hit
GGGTGT198400.14327341774766242No Hit
GGTGGT194380.14037039789208983No Hit
TGGTGG193560.13977823961309244No Hit
TGTGGG187620.13548870281157474No Hit
GGTTGG184540.13326449854412112No Hit
GGTGTG183860.13277344045909886No Hit
GGGGTA175530.12675797891757656No Hit
TGGGTG170630.12321947212844578No Hit
GTAGGG170630.12321947212844578No Hit
TGGGGT168500.1216813048915379No Hit
TTGGGG166690.12037422381228756No Hit
GGGTAG159840.11542753574993127No Hit
GGTAGG159120.11490759189520185No Hit
GTGGGC158480.1144454195798868No Hit
GTGGCG155710.11244508002766389No Hit
GTCGGG153420.11079136971192728No Hit
ATGGGG151350.10929653112958018No Hit
TGGCGG150990.10903655920221549No Hit
CTGGGG149610.10804000014731742No Hit
GGCGGT146590.10585912453442457No Hit
GGGGTC146550.10583023876471738No Hit
GCTGGG145570.10512253740689123No Hit
GTGGAG145570.10512253740689123No Hit
TAGGGG143220.10342549843659382No Hit
GGCTGG143050.10330273391533826No Hit
GTGCGG142370.10281167583031604No Hit
GGGGCT141780.10238561072713498No Hit
GGTCGG141300.10203898149064869No Hit
TGAGGG141260.10201009572094151No Hit
GTGGTT141150.10193065985424674No Hit
GCGGGT140810.10168513081173564No Hit
GGGTCG140730.10162735927232124No Hit
GTGAGG139800.10095576512662909No Hit
TGCGGG138990.10037082829005847No Hit
TCGGGG138820.10024806376880291No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)