FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17007520
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG551100.3240331335785582No Hit
GTGGGG363040.21345851717357972No Hit
TGGGGG340860.2004172272030255No Hit
GGGTGG333380.1960191726953724No Hit
GGTGGG288390.16956616837728253No Hit
AGGGGG282220.16593836138367027No Hit
CGGGGG279620.16440962585961974No Hit
GAGGGG253330.14895175781066258No Hit
GGGGTG240760.14156090952707978No Hit
GGGCGG237280.13951475582565828No Hit
GGGGGT235580.13851519798300987No Hit
GCGGGG234080.137633235180673No Hit
TTGGGG233150.13708641824322418No Hit
GTGTGG231510.13612213891266922No Hit
GTTGGG229590.13499322652567805No Hit
GGGGGC223840.13161236911672014No Hit
GGGGAG223800.1315888501086578No Hit
GGGGGA221930.13048933648174454No Hit
TGGTGG218510.12847846129241655No Hit
TGTGGG216390.1272319538651138No Hit
GGGGCG215410.12665573816758705No Hit
GGCGGG211870.12457430595407208No Hit
TGGGTG206350.12132868284147247No Hit
GTGGTG204380.12017037169440342No Hit
ATGGGG189380.11135074367103492No Hit
GGAGGG188020.1105510973969162No Hit
GGGAGG187580.11029238830823071No Hit
GGGTTG185900.10930458996961344No Hit
CTGGGG185810.10925167220147322No Hit
AGGTGG183630.10796988626207701No Hit
GTAGGG181770.10687625238717932No Hit
GTGGGT180790.10630003668965257No Hit
TAGGGG177950.10463018711722813No Hit
GGTTGG176600.10383642059512498No Hit
AGGGTG176180.10358947101047067No Hit
TGGGGT174700.10271926771216497No Hit
AGTGGG173650.10210189375052918No Hit
GGTGTG173030.10173734912556327No Hit
CGGTGG171490.10083186731516412No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)