FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3105237
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG92810.2988821787193699No Hit
GTGGGG63620.20487969195265932No Hit
GGGGTG60190.1938338361935015No Hit
GGGTGG59610.19196602384938735No Hit
GGTGGG58070.18700666003915323No Hit
TGGGGG56900.1832388316898195No Hit
GGGGGT52010.16749124140927085No Hit
GGGTTG51450.16568783638736753No Hit
TTGGGG46580.15000465342902972No Hit
CGGGGG45010.14494867863547936No Hit
AGGGGG43770.1409554246584077No Hit
GGTGTG41540.13377400823189983No Hit
GGGGAG40900.1317129739211532No Hit
GGTTGG39820.1282349785217682No Hit
GGGGGC39720.12791294191071406No Hit
TGTGGG39250.1263993698387595No Hit
CAATTT38850.12511122339454284No Hit
GGGGTT38780.1248857977668049No Hit
GGAGGG38670.12453155749464534No Hit
GTGGTG38660.12449935383353992No Hit
GGGTGT38600.12430613186690742No Hit
GTTTGG37790.1216976353173687No Hit
GGGGCG37160.11966880466772745No Hit
GTGTGG36970.11905693510672455No Hit
GTGGGT36920.11889591680119746No Hit
TTGGTG36910.11886371314009204No Hit
AGGTGG36780.11844506554572164No Hit
GGTTTG36550.11770438134029704No Hit
GAGGGG36500.11754336303476996No Hit
TTGTTG36350.11706030811818872No Hit
GGGAGG36230.11667386418492372No Hit
GTTGGG35790.1152569030962854No Hit
GGCGGT35600.11464503353528249No Hit
GGGGGA35000.1127128138689575No Hit
TGGGTG34790.11203653698574376No Hit
GGGGAT34360.11065177955821084No Hit
TGTGGT33610.10823650497530461No Hit
GTGGCG33180.10685174754777173No Hit
GGTGGT33100.1065941182589284No Hit
GGGATG32700.10530597181471174No Hit
TGGTGG32660.10517715717029007No Hit
GGGGTA32390.10430765832044384No Hit
TGGGGT32250.10385680706496798No Hit
GTTGTG31790.10237543865411884No Hit
TGGAGG31710.10211780936527551No Hit
GGGCGG31470.1013449214987455No Hit
GTTTTG31460.10131271783764008No Hit
GGTGTT31440.10124831051542926No Hit
TGGTGT31310.10082966292105884No Hit
GTGTTG31150.10031440434337217No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)