FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9581384
Sequences flagged as poor quality0
Sequence length6
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG831730.8680687466445349No Hit
GGGGGT386560.40344902156097695No Hit
GTGGGG379580.3961640614758786No Hit
GGGGTG333840.34842565541679577No Hit
GGGTGG327720.3420382692103771No Hit
TGGGGG320030.3340122888300897No Hit
GGGGGC311970.32560014294385864No Hit
GGTGGG311470.32507829766555646No Hit
GGGGCG305380.318722222175836No Hit
GGGCGG303550.31681226845725No Hit
CGGGGG300770.3139108087098899No Hit
GGCGGG293240.30605181881865917No Hit
GAGGGG285500.29797365391054154No Hit
GCGGGG284440.29686734192054093No Hit
GGGGAG283930.2963350597366727No Hit
GGGGGA280360.29260908444959516No Hit
AGGGGG268050.27976125369779564No Hit
GGGAGG265320.27691197847826576No Hit
GGAGGG258370.26965832910986554No Hit
GTGGTG191340.19969975110067606No Hit
GTGGGT174100.1817065259048171No Hit
GGGGTT173430.18100725323189218No Hit
TTGGGG172860.1804123496146277No Hit
GTGTGG164890.17209413587849104No Hit
GTTGGG163340.1704764155157543No Hit
GGGTGT163290.17042423098792409No Hit
GGTGGT161810.16887956896414966No Hit
GGTTGG154660.16141718148442855No Hit
TGGGGT153100.15978902421612576No Hit
GTCGGG151890.1585261586426345No Hit
GGGTTG151590.1582130514756532No Hit
CTGGGG146920.15333901657631088No Hit
GTGGCG146850.1532659582373486No Hit
CGGGGT143840.1501244496619695No Hit
GGGCGT142870.1491120698220633No Hit
TGGGTG142840.14908075910536517No Hit
GGGGCT139990.14610624101904277No Hit
GGTGTG138270.1443110932616833No Hit
TGGTGG137640.14365356821102254No Hit
GCAATT137500.14350745153309794No Hit
GGCGGT137370.14337177176073937No Hit
CGGGTG137150.1431421598382864No Hit
GGGGAT135000.14089822514158706No Hit
AGGGGT134710.1405955548801718No Hit
CGGGGC134370.14024070009092632No Hit
TCGGGG133940.13979191315158646No Hit
ATGGGG133680.13952055360686932No Hit
GGCCGG133460.13929094168441636No Hit
GGGGTA132650.13844555233356684No Hit
GGGTCG132610.13840380471130267No Hit
GAGGTG132530.13832030946677432No Hit
GCGGGT132220.13799676539422698No Hit
GTGGGC131830.13758972607715128No Hit
CGGTGG129980.13565889854743324No Hit
CCGGGG129800.13547103424724447No Hit
GGGTGC129030.1346673925186591No Hit
GTGGAG128680.13430210082384758No Hit
TGTGGG128630.13424991629601735No Hit
GGGCCG128360.13396811984573417No Hit
GTGGGA128030.13362370196205475No Hit
TGCGGG127610.13318535192828093No Hit
GCAGGG127270.13283049713903544No Hit
GTAGGG127270.13283049713903544No Hit
GAGGGT127180.13273656498894107No Hit
GGGGTC127170.132726128083375No Hit
CGGGCG126970.13251738997205414No Hit
GCGTGG126790.13232952567186537No Hit
GATGGG126480.132005981599318No Hit
GCGCGG125850.13134845654865726No Hit
GGAGGT124930.13038826123658126No Hit
GGTGAG124830.13028389218092085No Hit
GGGTGA124690.1301377755029962No Hit
AGGTGG123870.12928194924658065No Hit
GTGCGG123840.12925063852988253No Hit
GGCGGC123790.12919845400205232No Hit
TGGGGC122650.12800864676752335No Hit
GGTAGG122130.1274659276780891No Hit
GGGTAG122110.127445053866957No Hit
GGTCGG122010.12734068481129657No Hit
GCGGGC120590.1258586442209184No Hit
GGGGCC119380.12459577864742713No Hit
GTGAGG118480.12365645714648321No Hit
GGCGTG118350.12352077737412465No Hit
GCCGGG118010.12316592258487917No Hit
CGTGGG117990.12314504877374709No Hit
GGTGGA117490.12262320349544491No Hit
GGCGCG117490.12262320349544491No Hit
GGGCTG117220.12234140704516173No Hit
GGGGCA116850.12195524153921815No Hit
GCGGTG116740.12184043557799165No Hit
GGGATG116300.12138121173308573No Hit
GGGCAG115920.12098460932157609No Hit
CAGGGG115700.12075499739912313No Hit
GCTGGG115380.12042101642100973No Hit
AAGGGG115380.12042101642100973No Hit
GGTGGC115090.12011834615959448No Hit
TAGGGG114900.11992004495383966No Hit
GACGGG114860.11987829733157548No Hit
TGGGCG113810.11878242224714092No Hit
GGATGG113030.11796834361298952No Hit
GGAGTG112790.11771785787940449No Hit
TGGCGG112790.11771785787940449No Hit
GGTGCG111730.11661154588940388No Hit
GCGGCG111050.11590183631091291No Hit
GGCGGA110600.11543217556044096No Hit
GGGCGC110290.1151086314878936No Hit
GGCTGG109850.1146494076429877No Hit
GGGGAA109260.11403363021459112No Hit
TGGGGA109030.11379358138657213No Hit
AGGGTG108870.11362659089751542No Hit
GAAGGG108780.11353265874742104No Hit
GGGGAC108530.11327173610826995No Hit
GGGAGT108460.11319867776930766No Hit
GGGCGA108240.11296906584685469No Hit
CGCGGG108230.11295862894128866No Hit
GGACGG108120.11284382298006217No Hit
GGCAGG108100.1128229491689301No Hit
ACGGGG107890.11260377415204317No Hit
CGGGAG107670.11237416222959022No Hit
GGCGAG107060.11173751099006156No Hit
CGGGGA106980.1116540157455332No Hit
CGGCGG106860.11152877287874069No Hit
AGCGGG105970.11059988828336283No Hit
TGGGAG105950.11057901447223074No Hit
TGAGGG105700.11031809183307964No Hit
AGGGGC105580.11019284896628713No Hit
GCGGGA104630.109201342937513No Hit
TGGAGG104200.10875255599817313No Hit
GGGAGC103810.10834551668109742No Hit
AGTGGG103750.10828289524770117No Hit
GAGTGG103310.10782367140279527No Hit
AGAGGG103280.10779236068609711No Hit
GAGGGC103130.10763580710260648No Hit
CGAGGG102460.10693653442968155No Hit
AGGGCG102130.10659211654600212No Hit
GGGACG101990.1064459998680775No Hit
GCGAGG101660.10610158198439806No Hit
GGGAGA101460.10589284387307722No Hit
GAGAGG101040.10545449383930337No Hit
CGGAGG98260.10255303409194329No Hit
GGAAGG97470.10172851855222585No Hit
GGGAAG97400.10165546021326355No Hit
GAGGAG96630.10085181848467821No Hit
GAGGCG96340.10054914822326295No Hit
GCGGAG95980.10017341962288537No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)