FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10032754
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG924360.9213422356413802No Hit
GGGGGT429770.42836692696741097No Hit
GTGGGG410700.4093591849256944No Hit
GGGTGG388580.38731140023965505No Hit
TGGGGG381960.3807130125985348No Hit
GGTGGG377860.37662639789633034No Hit
GGGGTG372830.3716128193714308No Hit
CGGGGG336180.33508247087489634No Hit
GCGGGG333210.3321221670540312No Hit
AGGGGG315740.31470920148146764No Hit
GGGCGG311050.31003451295626305No Hit
GGGGGA310930.3099149047210766No Hit
GGGGCG304070.3030773006095834No Hit
GGGGGC303850.30285801884507485No Hit
GGCGGG301970.30098415649382015No Hit
GGAGGG298120.2971467256149209No Hit
GAGGGG287850.2869102541535455No Hit
GGGGAG276890.2759860353398479No Hit
GGGAGG269650.2687696718169308No Hit
GTGTGG225300.22456446156259788No Hit
GGGTTG209290.2086067295181363No Hit
GGGGTT207360.20668303040222058No Hit
GTGGGT203540.20287550158211792No Hit
GGGTGT201640.20098170452499883No Hit
TGGGGT195950.1953102807065737No Hit
GTTGGG194400.1937653410020818No Hit
CGGGGT183590.18299063248236727No Hit
GTGGTG180960.1803692186611971No Hit
TTGGGG180680.18009013277909536No Hit
GGTTGG175370.17479746837209403No Hit
TGTGGG169400.16884695867156715No Hit
GGTGGT166930.1663850224973123No Hit
GGGTCG165490.16494972367507466No Hit
GGTGTG165400.16486001749868479No Hit
TGGTGG164730.16419220485222702No Hit
CGTGGG161980.1614511827958704No Hit
CTGGGG160760.16023516573814128No Hit
GGCGGT160490.15996604720897173No Hit
TGGGTG157990.15747420897592027No Hit
GGGTAG155020.15451390515505514No Hit
GGGGCT154500.15399560280258043No Hit
GTAGGG152980.15248056515688513No Hit
GGAGGT151580.1510851357463763No Hit
ATGGGG150640.15014820457074896No Hit
AGGTGG150190.1496996736887997No Hit
GTCGGG149920.14943055515963014No Hit
CGGTGG149400.14891225280715545No Hit
GGGGTA149200.14871290574851131No Hit
GGGCGT148920.14843381986640955No Hit
AGGGGT148060.14757662751423986No Hit
GGTCGG147640.1471579986910872No Hit
GCGGGT145570.1450947566341206No Hit
CGGGTG145400.1449253116342731No Hit
TCGGGG144840.14436713987006958No Hit
GGATGG143400.14293184104783194No Hit
GGCTGG142530.14206468134273No Hit
GGCGTG141610.14114768487296708No Hit
GTGGGA141140.1406792192851534No Hit
GTGAGG140990.14052970899117034No Hit
TGCGGG140810.1403502966383906No Hit
CCGGGG140590.1401310148738821No Hit
TGGGCG139220.13876548752216988No Hit
GATGGG138920.13846646693420372No Hit
GCGTGG138830.13837676075781385No Hit
GGGGAT138320.13786842575827135No Hit
GGCCGG138040.1375893398761696No Hit
AGTGGG137270.13682185370038974No Hit
GGGAGT137180.1367321475239999No Hit
GGGCCG136770.13632348605377945No Hit
TAGGGG134260.1338216804677958No Hit
GGGTGC133970.1335326272327618No Hit
GGGGTC133620.1331837698801346No Hit
GGGATG133450.1330143248802871No Hit
CAGGGG133430.1329943901744227No Hit
GGTAGG133370.13293458605682945No Hit
GTGGGC133220.13278507576284637No Hit
GTGCGG133050.13261563076299887No Hit
AGGGTG132720.13228670811623608No Hit
GTGGCG132520.13208736105759197No Hit
GGGTGA132120.13168866694030373No Hit
GAGGGT132040.13160892811684607No Hit
GCTGGG129660.12923669811898109No Hit
GGGCTG129150.1287283631194386No Hit
GAGTGG128940.12851904870786227No Hit
TGGGGA127170.12675482723886183No Hit
GCGGTG126630.1262165901805227No Hit
TGGAGG125230.1248211607700139No Hit
GGACGG123640.12323635165379315No Hit
GAGGTG123380.12297720047755581No Hit
TGAGGG122860.12245889812508111No Hit
GGAGTG122030.12163160783170802No Hit
GCCGGG121630.1212329137144198No Hit
GTGGAG121590.12119304430269096No Hit
TGGCGG121150.12075448077367391No Hit
CGGGGA120260.11986738636270758No Hit
GACGGG119420.1190301287164023No Hit
GGCGGA118410.1180234260702495No Hit
ACGGGG118260.11787391577626641No Hit
GGGGCA116730.11634891077763891No Hit
GGTGGA114540.11416606048548583No Hit
GGGGCC113930.11355805195662128No Hit
GGGGAA113410.11303974960414657No Hit
GGTGCG113340.11296997813362113No Hit
AAGGGG111390.111026344311841No Hit
GGGCAG110970.11060771548868835No Hit
GAAGGG110750.11038843372417981No Hit
CGGGGC110670.11030869490072219No Hit
AGCGGG110110.10975052313651865No Hit
GGAAGG109880.10952127401907791No Hit
GGCGCG109700.10934186166629821No Hit
GGCAGG109460.10910264519592527No Hit
CGGGCG108780.10842486519653527No Hit
GGGAAG108640.10828532225548439No Hit
CGAGGG108170.10781685666767071No Hit
GTGTTG108170.10781685666767071No Hit
GGTGGC107950.10759757490316217No Hit
AGGCGG107800.1074480646091791No Hit
CGCGGG107540.10718891343294175No Hit
GGGCGA107450.10709920725655189No Hit
GGGTTT107390.10703940313895866No Hit
GGGAGA105880.10553433284619558No Hit
TGGGGC105790.10544462666980572No Hit
GCGGGC105360.10501603049372085No Hit
GGGACG104920.10457746696470381No Hit
GTGTGT104590.10424854431794102No Hit
CGGGAG104110.10377011137719513No Hit
GGCGAG103970.10363056843614425No Hit
AGAGGG103490.10315213549539838No Hit
TGGGAG103330.10299265784848308No Hit
AGGGCG103320.10298269049555087No Hit
AGGAGG103200.1028630822603644No Hit
AGGGGC102580.10224510637856764No Hit
AGGGGA102280.10194608579060147No Hit
GAGCGG101570.10123840373241484No Hit
GCGCGG101290.10095931785031309No Hit
GGCGGC101290.10095931785031309No Hit
GTTGGT100820.10049085226249942No Hit
GGTGAG100610.10028153785092309No Hit
GCAGGG100420.10009215814521118No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)