FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11704213
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG643720.5499899907836605No Hit
GTGGGG342480.292612583178382No Hit
TGGGGG342420.2925613195863746No Hit
GGGGGT339370.28995542032599714No Hit
GGGGTG337830.28863965479780657No Hit
GGGTGG327550.27985649270053436No Hit
GGTGGG310290.26510966606639846No Hit
CGGGGG284430.24301505791119832No Hit
GGAGGG251540.21491406555912818No Hit
GGGGCG248050.21193223329069627No Hit
GGCGGG240040.20508854375770502No Hit
GGGGGA237220.20267915493335603No Hit
GGGCGG236060.2016880588212125No Hit
GCGGGG234530.20038083722502317No Hit
GAGGGG227730.19457096346418165No Hit
GGGGGC224090.19146097221573122No Hit
GGGAGG218620.1867874414110543No Hit
GGGGAG217150.1855314834068724No Hit
GTGTGG205010.17515914995737006No Hit
TGTGGG199440.17040017983268074No Hit
GGTGGT197440.16869139343243328No Hit
TTGGGG197220.16850342692840603No Hit
TGGGGT196040.16749524295226No Hit
TGGGTG193440.16527382063193824No Hit
GGGTGT190790.1630096786516103No Hit
GTGGTG190450.16271918496356824No Hit
GGGTTG186630.15945540293909552No Hit
TGGTGG186510.15935287575508067No Hit
GGTTGG186180.15907092599903985No Hit
GGTGTG186030.15894276701902127No Hit
GGGGTT183630.15689222333872427No Hit
GTGGGT180870.15453409810638272No Hit
GTTGGG177360.15153517797394836No Hit
GTCGGG161050.13760002487992998No Hit
GGGGTA152890.1306281763669202No Hit
CGTGGG150890.12891938996667268No Hit
CGGGGT150300.12841529797859966No Hit
GTAGGG150250.12837257831859347No Hit
CTGGGG149680.12788557419452293No Hit
TAGGGG148680.1270311809943992No Hit
TGCGGG148300.12670651157835217No Hit
GTGGCG145830.1245961603740465No Hit
CGGTGG145090.12396390940595493No Hit
TCGGGG143300.12243454557773342No Hit
TGGGGA140900.12038400189743642No Hit
GGGTCG139800.11944416937730029No Hit
GTGCGG139230.11895716525322975No Hit
TGAGGG138460.11829928248913446No Hit
GTGAGG138330.11818821137311837No Hit
GGGGCT137890.11781227836506394No Hit
TGGGGC137880.1178037344330627No Hit
TTGGGT136690.11678700652491543No Hit
GTGGGC136230.11639398565285852No Hit
GCGGGT134610.11500986866865802No Hit
GTGGGA133730.11425800265254912No Hit
GGTAGG133630.11417256333253675No Hit
GGTCGG133550.11410421187652686No Hit
GGGTAG133510.1140700361485219No Hit
GGCGGT132670.11335234586041795No Hit
GAGGTG132010.11278844634833628No Hit
GGGTGC131820.11262611164031278No Hit
GGAGGT131330.11220745897225212No Hit
GGGTGA130290.11131889004412343No Hit
GGGAGT130190.11123345072411105No Hit
GAGGGT129830.1109258691720665No Hit
TGGCGG128950.1101740031559576No Hit
GCGGTG127820.10920853883981775No Hit
GGCGTG127530.10896076481178188No Hit
GGTGGA126890.10841395316370267No Hit
GGGGAT126730.10827725025168287No Hit
GGCTGG126330.10793549297163336No Hit
CGGGTG126280.10789277331162718No Hit
GGTGGC126160.10779024612761233No Hit
GATGGG125740.10743140098356037No Hit
GCGTGG125590.1073032420035418No Hit
GTGTTG125550.10726906627553684No Hit
TGGTTG125150.10692730899548736No Hit
GGGATG124600.10645739273541929No Hit
TGGAGG124410.10629505802739578No Hit
GGTTTG124260.10616689904737722No Hit
GTTTGG123500.10551756021528318No Hit
GGGCGT123500.10551756021528318No Hit
TTGTGG123410.10544066482727203No Hit
GGGCCG122820.10493657283919902No Hit
TGGGCG122510.10467171094716064No Hit
GGAGTG122300.10449228837513466No Hit
TGTTGG121670.10395402065905669No Hit
GGGCTG121360.10368915876701834No Hit
GGTGTT121240.10358663158300349No Hit
TTTGGG120410.10287748522690078No Hit
CAGGGG119730.10229649785081663No Hit
CCTCCT119690.10226232212281168No Hit
TGTGTG119290.10192056484276217No Hit
TGGTGT119250.10188638911475723No Hit
TGTGGT118950.10163007115472011No Hit
GTGTGT118850.10154463183470772No Hit
GAGTGG117780.1006304311105753No Hit
GGGGTC117630.10050227213055675No Hit
GTGGAG117400.10030576169452829No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)