FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8520796
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG485790.5701227913448461No Hit
CGGGGG216240.2537791070223956No Hit
GGGTGG215090.25242946785722836No Hit
GGGGGT208660.24488322452503264No Hit
GTGGGG205340.24098687493515863No Hit
GGGCGG198670.23315896777718886No Hit
TGGGGG197140.23136336088787948No Hit
GCGGGG194280.22800686696407235No Hit
GGGGTG186500.21887626461189777No Hit
AGGGGG185250.2174092655193247No Hit
GGGGGC184350.21635302617267213No Hit
GGCGGG183590.2154610907243877No Hit
GGTGGG183420.21526157884779779No Hit
GAGGGG172310.2022228909130086No Hit
GGGGGA169650.19910111684401316No Hit
GGGGCG168760.19805661349010115No Hit
GGAGGG167340.1963901025209382No Hit
GGGAGG158430.18593333298907755No Hit
GGGGAG149690.17567607533380683No Hit
GGTGGT108770.12765239303933576No Hit
TGTGGG107460.12611497799031923No Hit
GGGTGT104900.12311056384872962No Hit
CGGTGG104610.12277022005925267No Hit
GTTGGG104020.12207779648755822No Hit
TGCGGG103530.12150273284326958No Hit
CAGGGG102390.12016482967084295No Hit
GGCTGG101640.11928463021529914No Hit
GGGCCG101370.11896775841130336No Hit
CGGGGT101090.11863915061456701No Hit
GTGTGG100730.11821665487590596No Hit
GCCGGG100480.11792325505739136No Hit
CCGGGG100000.1173599274058433No Hit
GGCCGG99500.11677312776881409No Hit
GTGGGT99440.11670271181237059No Hit
GGGTTG98710.11584598434230793No Hit
GGGGTT97610.11455502514084366No Hit
GTCGGG96710.11349878579419105No Hit
CTGGGG96470.11321712196841703No Hit
TGAGGG96410.11314670601197353No Hit
GGGGCT96100.1127828902370154No Hit
GCGGGT95660.1122665065564297No Hit
GGGGTA95440.11200831471613684No Hit
GTGCGG95370.11192616276695276No Hit
ATGGGG94660.11109290728237127No Hit
GGTTGG94190.11054131562356381No Hit
TGGGGT93900.11020097183408686No Hit
AGTGGG93800.11008361190668102No Hit
AGGTGG93700.10996625197927518No Hit
GGCGGT92620.10869876476329206No Hit
TGGTGG92480.10853446086492388No Hit
GAAGGG92440.10848751689396155No Hit
GTGGTG92400.1084405729229992No Hit
AGGGGT91220.10705572577961026No Hit
GGGAGT90990.10678579794657682No Hit
GGGTCG90670.10641024617887812No Hit
CGGGTG90420.10611684636036352No Hit
GGGGAA89510.10504887102097034No Hit
GGGGAC89490.10502539903548917No Hit
ACGGGG89350.10486109513712098No Hit
GGACGG89340.1048493591443804No Hit
TAGGGG89330.10483762315163983No Hit
TGGGCG89230.10472026322423397No Hit
TGGGTG88630.10401610365979891No Hit
GGTCGG88630.10401610365979891No Hit
GGGTGC88250.1035701359356567No Hit
GGAGGT88080.10337062405906677No Hit
TTGGGG87750.10298333629862749No Hit
GGTGTG87440.10261952052366939No Hit
GGGAAG86450.10145765724235153No Hit
GGTAGG86420.10142244926412977No Hit
GGTGGC86200.10116425742383692No Hit
GCGTGG86190.10115252143109633No Hit
GTAGGG86070.10101168951820932No Hit
GTGAGG85990.10091780157628466No Hit
CGGCGG85830.10073002569243532No Hit
CGCGGG85740.10062440175777004No Hit
GGAAGG85460.10029579396103369No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)