FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11177452
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG384360.3438708571506279No Hit
TGGGGG244000.21829662073252473No Hit
GGGGGT242370.21683832773336892No Hit
GTGGGG227200.20326636160012138No Hit
GGGTGG210100.18796770498321083No Hit
GGGGTG206040.1843353923595467No Hit
GGTGGG201250.18004997919024837No Hit
AGGGGG195490.17489674748771009No Hit
GGGCGG168240.15051730931163917No Hit
GGGGAG163600.14636609488459443No Hit
GGGTTG163600.14636609488459443No Hit
GGAGGG162190.1451046267074106No Hit
TGTGGG161670.14463940440093145No Hit
CGGGGG161350.14435311375079043No Hit
GGGAGG158660.1419464829730425No Hit
GGGGTT156360.13988876892515398No Hit
GGGGGC155260.13890464481529421No Hit
GGGGGA154990.13866308707923775No Hit
TGGTGG154630.1383410100978291No Hit
GGGGCG151770.13578228741219375No Hit
GAGGGG149170.13345617587979802No Hit
GCGGGG145660.13031592531106373No Hit
TGGGTG143450.12833873050852734No Hit
GTGGTG143320.12822242493190755No Hit
TTGGGG142910.12785561503641438No Hit
GTGGGT142320.12732776665021686No Hit
GGGTGT139890.12515374702570856No Hit
GGCGGG139460.12476904396458155No Hit
TGGGGT137390.12291710132148186No Hit
GGTTGG136620.12222821444458003No Hit
GTGTGG136000.12167352630993182No Hit
GGTGGT133990.11987526316373355No Hit
GGTGTG127420.11399735825302583No Hit
GTTGGG123310.11032031271527715No Hit
GGGTAG119010.10647328210400724No Hit
AGTGGG114950.1028409694803431No Hit
TAGGGG114850.10275150365217404No Hit
CTGGGG114410.10235785400823014No Hit
TGAGGG111940.10014804805245417No Hit
TGGGAG111830.10004963564146821No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)