FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8253398
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG855391.0364094885524726No Hit
GTGGGG370910.44940277931586486No Hit
GGGTGG359660.43577202989605013No Hit
GGGGGT347220.4206994500931616No Hit
GGGGTG328220.3976786288508079No Hit
AGGGGG319390.3869800050839666No Hit
GGTGGG314510.3810672888911936No Hit
TGGGGG310470.37617233532176686No Hit
GCGGGG293240.35529608532146395No Hit
GGCGGG283190.3431192825064295No Hit
GAGGGG282700.3425255876428109No Hit
GGGCGG280600.33998118108444547No Hit
GGGGGA275970.33437137043433507No Hit
CGGGGG274760.3329053076078483No Hit
GGGGGC274730.3328689589427288No Hit
GGGAGG271960.3295127655300278No Hit
GGAGGG262230.3177236818096013No Hit
GGGGAG256970.3113505491919813No Hit
GGGGCG255020.3089878859592134No Hit
GTGTGG176720.21411786999730292No Hit
GTGGTG170260.20629079077490267No Hit
GTGGGT161110.19520444791345334No Hit
TTGGGG158100.19155746517979627No Hit
GTTGGG156680.18983696169747297No Hit
TGTGGG153160.18557205165678428No Hit
GGGTGT152540.18482084591098114No Hit
GGGTTG151170.18316092353719038No Hit
TGGTGG150270.1820704635836052No Hit
ATGGGG147700.17895659460503419No Hit
GTCGGG146360.1773330208963629No Hit
GGTGGT143680.1740858734790204No Hit
GTAGGG143310.1736375732758798No Hit
GGGGTT141720.171711094024546No Hit
GGTTGG141680.17166262913772No Hit
GGTGTG140140.1697967309949187No Hit
GGATGG139720.16928784968324562No Hit
TAGGGG139050.16847606282890998No Hit
AGGGTG137710.16685248912023873No Hit
TGGGTG136870.16583472649689257No Hit
GGGTAG135920.16468368543477485No Hit
AGTGGG133330.16154558401279084No Hit
AGGTGG132830.16093977292746575No Hit
GTGCGG132570.1606247511630967No Hit
GGGGTA130870.15856499347299136No Hit
CGGTGG130160.15770474173182975No Hit
GTGGAG130020.1575351146279387No Hit
GGTAGG129190.15652946822629904No Hit
AAGGGG127920.15499070806957327No Hit
TGAGGG127150.15405775899817262No Hit
GGGCTG125250.15175567687393726No Hit
TCGGGG124800.15121044689714466No Hit
GGGTCG123930.150156335608679No Hit
GAGGGT123500.1496353380752994No Hit
GTGAGG123170.14923550275898484No Hit
TGGGGA122390.1482904374658777No Hit
GGCTGG122380.1482783212441712No Hit
GAGGTG121260.14692130441304296No Hit
GGGATG118400.1434560650049834No Hit
AGGGGT118290.1433227865662119No Hit
GGGAAG118280.14331067034450537No Hit
GAGTGG117350.1421838617258007No Hit
GCGTGG117250.14206269950873568No Hit
GCCGGG117250.14206269950873568No Hit
GGTGAG116770.1414811208668236No Hit
GATGGG116470.1411176342156285No Hit
ACGGGG115980.14052393935200994No Hit
TGGGAG115840.1403543122481189No Hit
GCAGGG115700.14018468514422786No Hit
GCTGGG115350.1397606173845003No Hit
GGGGCT115340.1397485011627938No Hit
GGGCGT114880.1391911549642947No Hit
GGCAGG114110.13825820589289406No Hit
GTGGGC113060.13698600261371133No Hit
GGGGAT112740.13659828351910328No Hit
TGCGGG112700.13654981863227728No Hit
GGCGGT112640.13647712130203826No Hit
GGGTGC112600.13642865641521226No Hit
GTGGCG112490.13629537797644073No Hit
AGCGGG112470.13627114553302774No Hit
GGAGTG111970.13566533444770262No Hit
GGGTGA111840.1355078235655181No Hit
GTGGGA111500.13509587202749704No Hit
GGTGGA111450.13503529091896452No Hit
CTGGGG110580.13398117963049885No Hit
GGGGAA110160.1334722983188258No Hit
GCGGGT110040.13332690365834776No Hit
GGTCGG109590.13278167368155516No Hit
TGGGGC109280.1324060708086536No Hit
GCGGTG109180.1322849085915886No Hit
GGCGTG109150.13224855992646908No Hit
AGAGGG107580.13034631311854825No Hit
GGAAGG107200.1298858966937012No Hit
TGGGGT107150.1298253155851687No Hit
GGCCGG106450.12897718006571354No Hit
AGGGCG106250.1287348556315835No Hit
TGGGCG106180.12865004207963798No Hit
CGTGGG104010.12602082196932707No Hit
CGGGTG103920.12591177597396855No Hit
GGGCCG103840.12581484620031652No Hit
GGAGGT103690.12563310287471902No Hit
CCGGGG103160.1249909431242744No Hit
GGTGGC102910.12468803758161184No Hit
GAGAGG102490.12417915626993876No Hit
GGGGTC100750.12207093369300741No Hit
CGGGGT100480.12174379570693186No Hit
GGGGAC100250.12146512260768233No Hit
GGGCGC100210.1214166577208563No Hit
GGTGCG99230.1202292679936191No Hit
GAAGGG98560.11941748113928348No Hit
GAGCGG97950.11867839161518687No Hit
AGGGAG97920.11864204295006736No Hit
CGGGAG97270.11785448853914474No Hit
GGCGGA96950.11746676944453666No Hit
GGGGCA96490.11690942324603756No Hit
AGGAGG96460.11687307458091807No Hit
GGGGCC95070.11518891976371429No Hit
GGGCAG93800.11365015960698853No Hit
GCGGGC93560.11335937028603249No Hit
GGGAGT93470.11325032429067398No Hit
AGGGGA93060.11275355920070738No Hit
AGGGGC93000.11268086187046839No Hit
GAGGAG92380.11192965612466525No Hit
GGGACG92090.1115782856951767No Hit
AGGCGG92030.1115055883649377No Hit
GACGGG91440.11079073128425407No Hit
CAGGGG91420.11076649884084107No Hit
GGCGGC91270.11058475551524354No Hit
GCGGGA91200.11049994196329803No Hit
GGAGAG90880.11011222286868996No Hit
CGAGGG90110.10917927379728931No Hit
GCGAGG89840.10885213581121377No Hit
GAGGCG89770.10876732225926825No Hit
GGGAGC89660.10863404382049673No Hit
GCGCGG89490.10842806805148619No Hit
GGCGCG88960.10778590830104158No Hit
TGGCGG88350.10704681877694497No Hit
CGCGGG87800.10638042658308736No Hit
GGACGG87430.10593212637994677No Hit
CGGAGG87420.10592001015824028No Hit
GGGAGA86680.10502340975195913No Hit
GTGTTG86160.10439336622322104No Hit
CGGGGA86150.10438125000151452No Hit
GCGGAG85730.10387236868984145No Hit
GAGGGA85210.10324232516110335No Hit
GGCGAG85200.10323020893939686No Hit
GGAGGC85030.10302423317038632No Hit
GAGGGC83930.1016914487826711No Hit
TTGTGG83260.10087966192833546No Hit
GGAGGA82740.10024961839959735No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)