FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9925559
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG300720.302975379018955No Hit
GGGGTG168100.16936073827176887No Hit
GGGCGG166390.16763791339107448No Hit
GGGGGT165200.16643898847410005No Hit
CGGGGG163810.16503856357107946No Hit
GTGGGG159680.16087758885922696No Hit
GGTGGG156970.15814726404830198No Hit
GGGTGG156040.1572102891131875No Hit
GCGGGG153890.15504416426319162No Hit
GGGGGC153650.15480236427993627No Hit
TGGGGG151910.15304931440133498No Hit
GGCGGG149310.15042981458273535No Hit
GAGGGG148740.1498555396225039No Hit
GGGGCG144760.14584568990018598No Hit
GGGGAG137110.13813831543392163No Hit
AGGGGG134760.13577069059787966No Hit
GGAGGG134140.1351460406411367No Hit
GGGGGA132050.1330403657869547No Hit
GGGAGG127710.12866781608975372No Hit
GGTCGG104790.10557591768886769No Hit
GGTGTG104680.10546509269654233No Hit
GGGGCC101640.10240229290864121No Hit
GGTGGT101570.10233176791352508No Hit
GGGGTC100860.10161644296306131No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)