FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10104947
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG508370.5030902190778438No Hit
GGGGGT264890.26213893056539533No Hit
GTGGGG240700.23820016077273834No Hit
TGGGGG235920.23346980444330878No Hit
GGGTGG234380.2319457984292248No Hit
GGGGTG220050.2177646255838848No Hit
GGTGGG218900.2166265691447961No Hit
GCGGGG213060.21084722166281525No Hit
CGGGGG210760.20857110878463786No Hit
GGCGGG210760.20857110878463786No Hit
GGGGGA210260.20807630163720803No Hit
GGGCGG208260.2060970730474885No Hit
AGGGGG207110.20495901660839982No Hit
GGGGAG200010.19793275511489572No Hit
GGGGCG196040.19400398636430255No Hit
GGGAGG192990.19098566276498036No Hit
GGAGGG189920.18794754687976098No Hit
GAGGGG184920.1829994754054623No Hit
GGGGGC181530.17964468294588778No Hit
GTGTGG139650.13819963627716206No Hit
GTGGGT131640.13027282577533558No Hit
GGGTAG123640.1223559114164577No Hit
GTTGGG122370.12109910126198584No Hit
GGGTTG121460.1201985522536635No Hit
GTCGGG121440.12017875996776628No Hit
GTGGTG121400.12013917539597188No Hit
CGGGGT119660.11841724652291595No Hit
GGTTGG119220.11798181623317767No Hit
TGTGGG118960.11772451651651415No Hit
GGGCCG117330.11611144521589277No Hit
TGGTGG116940.11572549564089747No Hit
GGCTGG116760.11554736506782272No Hit
CTGGGG116160.11495359649090688No Hit
ATGGGG115810.11460723148770596No Hit
TTGGGG114050.11286551032875283No Hit
GGGGTA113540.11236080703837437No Hit
CAGGGG113480.11230143018068278No Hit
GGGTGT113310.11213319575055664No Hit
AGGGGT113010.11183631146209873No Hit
GGTGGT112160.11099513931146793No Hit
CCGGGG111990.11082690488134178No Hit
GTAGGG111900.1107378395948044No Hit
GGGGTT110590.10944144486853816No Hit
GGGCGT110030.1088872608634167No Hit
GGCCGG109540.10840234985893542No Hit
GGGGCC108910.1077788928531738No Hit
GTGGCG107600.10648249812690753No Hit
AGGTGG107550.10643301741216456No Hit
GCGTGG107470.10635384826857579No Hit
GTGAGG106960.10584914497819731No Hit
AGCGGG106720.10561163754743098No Hit
CGCGGG106630.1055225722608936No Hit
CGGTGG105980.10487932296923477No Hit
TGCGGG105740.10464181553846844No Hit
CGGGAG105420.10432513896411331No Hit
GGTGTG105320.10422617753462736No Hit
GGGGCT105240.10414700839103856No Hit
GGGTCG104990.10389960481732363No Hit
TGGGGT104900.10381053953078626No Hit
GGATGG104450.10336521309809937No Hit
TCGGGG104290.10320687481092182No Hit
GTGGAG104110.10302874423784707No Hit
GTGCGG103940.1028605098077209No Hit
GCTGGG103930.10285061366477231No Hit
GAGGGT103800.10272196380644055No Hit
AGGGTG103690.10261310623400598No Hit
GCGGGT102940.10187089551286117No Hit
GGGGTC102750.10168286879683783No Hit
TGGGTG102090.1010297233622304No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)