FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10579783
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG433650.40988553356907226No Hit
GGGGGT288340.27253867116178093No Hit
GGGTGG263770.24931513245593034No Hit
GTGGGG252080.23826575649046866No Hit
GGTGGG247980.23439044071130757No Hit
TGGGGG242780.22947540606456673No Hit
GGGGTG241650.22840733122787113No Hit
AGGGGG202850.19173361117142004No Hit
CGGGGG198560.18767870758785885No Hit
GGGGTT196490.18572214571886775No Hit
GGTGGT181640.1716859410065405No Hit
GGGGGC177180.16747035359798967No Hit
GGGTGT176530.16685597426714707No Hit
GGGGGA175540.16592022728632524No Hit
GTGGGT173650.16413380123202903No Hit
GCGGGG173400.16389750148939727No Hit
GGGAGG172800.16333038210708103No Hit
GGGGAG169590.16029629341168908No Hit
GGTTGG169510.1602206774940469No Hit
GGGTTG168340.1591147946985302No Hit
GGGCGG167630.158443703429456No Hit
GAGGGG165530.15645878559134907No Hit
GGAGGG158870.15016376044763868No Hit
GGGGCG156840.14824500653746867No Hit
GTGTGG155920.14737542348458374No Hit
TTGGGG154540.14607104890525638No Hit
TGGGGT154050.1456079014096981No Hit
GTTGGG151670.14335832785984362No Hit
TGTGGG150580.1423280609819691No Hit
GGCGGG145990.13798959770724978No Hit
TGGTGG143710.135834544054448No Hit
GGGTTT141680.133915790144278No Hit
TGGGTG137260.12973801069454827No Hit
GTGGTG132190.12494585191397593No Hit
GGTGTG130410.12326339774643771No Hit
AGGTGG130320.12317832983909027No Hit
CGGGGT129520.1224221706626686No Hit
ATGGGG127170.12020095308192995No Hit
GGATGG125490.11861301881144443No Hit
GGGGAT124130.11732754821152759No Hit
TCGGGG123210.11645796515864268No Hit
AGGGGT122880.11614604949836874No Hit
GGAGGT122320.11561673807487355No Hit
GGGGTA122270.1155694781263472No Hit
GGGGTC119960.11338606850442963No Hit
GGGTAG118580.11208169392510224No Hit
CGGTGG118570.11207224193539697No Hit
GAGGGT118120.11164690239865978No Hit
TTGGGT115220.10890582538413122No Hit
TAGGGG114920.1086222656929731No Hit
GGGTCG114510.10823473411505698No Hit
GGTGTT114480.10820637814594118No Hit
GGTTGT114040.10779049059890926No Hit
GGGGCT112390.10623091229753957No Hit
TTGTGG110370.10432161037707482No Hit
TTGGTG109880.10385846288151657No Hit
GGGAGT109240.10325353554037923No Hit
TGGTGT108780.10281874401393677No Hit
GGGCTG108690.10273367610658933No Hit
GGGCGT108010.1020909408066309No Hit
GGCTGG107500.10160888933166211No Hit
GGGATG107460.10157108137284102No Hit
TGGGTT107230.10135368560961978No Hit
GTTGGT106320.10049355454644013No Hit
TTTGGG106310.10048410255673486No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)