FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483119

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483119
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8085348
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG279060.34514284357333785No Hit
GGGTGG175090.2165522127186115No Hit
GGGGGT167850.20759774347375032No Hit
TGGGGG165810.20507466097934188No Hit
GGTGGG160440.19843301735435503No Hit
GGGGTG158500.1960336153743784No Hit
GTGGGG150560.18621338252849476No Hit
GGGCGG138440.17122330417936246No Hit
GCGGGG124240.15366067113004908No Hit
GGGGAG120460.14898554768452762No Hit
GGTTGG119830.14820636044360738No Hit
GGGGGA118730.14684587478485775No Hit
GGGGCG117930.14585643066940346No Hit
AGGGGG117650.14551012522899448No Hit
TGTGGG117390.14518855589147184No Hit
TGGTGG117360.1451514517371423No Hit
GGGTGT116590.14419911177601757No Hit
GAGGGG113320.1401547589540982No Hit
GTTGGG113120.13990739792523463No Hit
GGGTTG112480.13911584263287122No Hit
GGTGGT111970.13848507200926913No Hit
CGGGGG109710.13568989238311077No Hit
GTGGTG109060.13488596903930417No Hit
GGCGGG107760.133278122351691No Hit
GTGTGG107100.1324618309564412No Hit
GGGAGG106690.13195474084727088No Hit
GGGGGC105680.13070556765150987No Hit
GGTGTG105450.13042110246831676No Hit
TGGGTG104260.12894930434657853No Hit
GTGGGT100950.12485547931888646No Hit
TGGGGT100400.12417523648951166No Hit
GGAGGG100060.12375472274044358No Hit
GGGGTT98910.12233239682447805No Hit
GTGTGT91130.11271005280168522No Hit
GGGTAG91080.11264821254446933No Hit
GGTTGT89790.11105273390829931No Hit
GGGGTA89600.11081774093087893No Hit
CGGTGG88600.10958093578656107No Hit
GGGTCG88090.10895016516295898No Hit
TGTGGT86560.10705785329215267No Hit
GGGCGT86490.10697127693205043No Hit
AGGTGG84970.1050913331126873No Hit
GGGCTG84570.10459661105496015No Hit
GGTTTG84470.10447293054052836No Hit
GGTGGC83110.1027908755442561No Hit
GCGGGT82500.10203642440622222No Hit
GGTGAG82160.10161591065715415No Hit
GGTCGG81660.10099750808499523No Hit
GCGTGG81520.10082435536479073No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)