FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8855783
Sequences flagged as poor quality0
Sequence length6
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG613250.6924853510976952No Hit
CGGGGG307100.3467790482219359No Hit
GGGCGG292550.3303491063410203No Hit
AGGGGG283340.3199491225112449No Hit
GTGGGG277710.313591694828114No Hit
GCGGGG273350.30866835829197714No Hit
GGGGCG268060.30269486052221467No Hit
GGGGGC253510.28626491864129916No Hit
GGCGGG251540.2840403835550171No Hit
GGGTGG250230.28256112418292095No Hit
GGGGGT245270.27696026427025144No Hit
GAGGGG226760.25605866810422073No Hit
GGTGGG226430.25568603024712777No Hit
TGGGGG225720.25488429425156417No Hit
GGGAGG217560.24566997633072082No Hit
GGGGTG217140.245195709967148No Hit
GGGGGA210250.23741548319329867No Hit
GGGGAG210010.2371444738426856No Hit
GGAGGG182200.2057412653403996No Hit
CGCGGG148350.1675176548476854No Hit
GGCCGG145720.1645478440472175No Hit
GGGCCG141930.16026815471878658No Hit
CGGGGC132330.149427780694265No Hit
CCGGGG130650.14753071523997371No Hit
GGGCAG128730.14536264043506938No Hit
GTGTGG124900.1410377828815363No Hit
CTGGGG124700.1408119417560254No Hit
GGGCGT124540.14063126885561672No Hit
GGGTCG124420.1404957641803102No Hit
ACGGGG124000.1400214978167374No Hit
AGGGCG123990.14001020576046183No Hit
GGTGGT122860.13873420340132545No Hit
GCCGGG121500.13719848374785154No Hit
AGGGGC121410.13709685524137166No Hit
GTGGCG121240.1369048902846874No Hit
TGGGCG121000.1366338809340744No Hit
GCGCGG120500.1360692781202972No Hit
GGGGCA118830.1341835047222815No Hit
AGGCGG117050.13217351870523478No Hit
GGCGCG116840.13193638552344836No Hit
TGGGGT116780.1318686331857951No Hit
GCGGGT114910.1297570186622685No Hit
GGGAGC114760.12958763781813532No Hit
GCGGGC114400.12918112379221577No Hit
TCGGGG114380.12915853967966467No Hit
GAGTGG114240.1290004508918071No Hit
CGTGGG113620.1283003434027234No Hit
CGAGGG112390.12691142048083157No Hit
GAGCGG111880.12633552561077885No Hit
GTGCGG111460.12586125924720604No Hit
CGGCGG111150.1255112055026642No Hit
GGCGGC110920.1252514882083267No Hit
AGGGGT110600.12489014240750931No Hit
GGCAGG110500.12477722184475387No Hit
TTGGGG110270.12451750455041638No Hit
AGGTGG109800.12398677790546585No Hit
GAAGGG109420.1235576797669952No Hit
GGGGTC109380.12351251154189302No Hit
CGGTGG109340.12346734331679084No Hit
CGGGCG109270.12338829892286204No Hit
GAGGGT109080.12317374985362672No Hit
GGGCGC108970.12304953723459575No Hit
GGCTGG108160.12213488067627674No Hit
AGCGGG108160.12213488067627674No Hit
AGGGAG107960.12190903955076587No Hit
GGGACG107260.12111859561147784No Hit
GGTCGG107210.12106213533010012No Hit
GGGGCC107070.12090404654224252No Hit
CGGGTG106360.12010231054667893No Hit
TGGTGG105230.11882630818754254No Hit
ATGGGG105120.11870209556851156No Hit
GGGGCT104880.11843108621789851No Hit
GTCGGG104840.11838591799279634No Hit
GCGGCG104380.11786648340412136No Hit
AAGGGG104370.11785519134784582No Hit
CGGAGG104190.11765193433488602No Hit
GCGAGG103780.11718896002758876No Hit
GGGTTG103760.11716637591503766No Hit
GAGGGC103410.11677115394539364No Hit
GGGTGT103350.11670340160774038No Hit
TGCGGG103100.1164211002008518No Hit
CAGGGG102950.11625171935671866No Hit
GCAGGG102840.1161275067376877No Hit
TAGGGG102350.11557419598018605No Hit
GCTGGG102030.11521285017936868No Hit
CGGGGA101830.11498700905385781No Hit
GGGGTT101720.11486279643482683No Hit
GGGAGT101480.11459178708421378No Hit
AGGGTG101470.11458049502793824No Hit
GGCGGT101470.11458049502793824No Hit
CGGGGT101440.11454661885911162No Hit
GGGAAG100800.11382392725747684No Hit
GGTAGG100250.11320286416232196No Hit
GGTTGG99190.11200590619711435No Hit
GCGTGG99020.11181394124043012No Hit
GGGTAG98970.1117574809590524No Hit
GTGAGG98650.11139613515823502No Hit
GACGGG98080.11075248795052905No Hit
TGGGTG97510.11010884074282308No Hit
GGGCTG97280.10984912344848559No Hit
GGTGTG97000.10953294587277038No Hit
GTTGGG96580.10905867950919755No Hit
GGGGAT96330.10877637810230896No Hit
GAGAGG96120.10853924492052257No Hit
GGAGGT96060.10847149258286928No Hit
GGGGTA95390.1077149248124079No Hit
TGGCGG95290.10760200424965245No Hit
GGTGGC94670.10690189676056877No Hit
GGGTGA94600.10682285236663996No Hit
GGGCGA93580.10567106262653456No Hit
GGCGGA93270.10532100888199271No Hit
GTGGGA92320.10424826353581608No Hit
AGGAGG92290.10421438736698946No Hit
GGTGCG91840.10370624483459001No Hit
AGGGGA91270.10306259762688404No Hit
GTAGGG90600.10230602985642265No Hit
GAGGCG89390.10093969104708188No Hit
CGGGAG89380.10092839899080634No Hit
AGAGGG89070.1005783452462645No Hit
GCGGGA89020.1005218849648868No Hit
TGGGGA88980.10047671673978462No Hit
GGGATG88810.10028475178310038No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)