FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7332675
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG768661.0482668330452394No Hit
GGGTGG337700.4605413440524775No Hit
GTGGGG336210.45850934345242356No Hit
GGGGTG317200.43258428881683697No Hit
GGTGGG307830.4198058689359613No Hit
CGGGGG300660.41002771839744706No Hit
TGGGGG293490.4002495678589328No Hit
GGGGGT279880.3816888107000515No Hit
AGGGGG269870.36803758519230706No Hit
GCGGGG265880.362596187612297No Hit
GGGAGG255930.3490267876320715No Hit
GGCGGG250830.34207161779296097No Hit
GGGCGG247160.3370666230263853No Hit
GGGGAG244600.3335754005189102No Hit
GAGGGG239020.32596562645964805No Hit
GGGGCG238040.32462914284350525No Hit
GGGGGA212430.2897032801808344No Hit
GGAGGG207230.28261173446252563No Hit
GTTGGG162410.22148806540587168No Hit
GGGTTG161920.22081982359780025No Hit
GTGTGG148560.20260000613691453No Hit
TGGGGT145650.1986314680522456No Hit
GGGTAG142330.1941037888628638No Hit
GGGGTT140920.19218088896616856No Hit
TGTGGG139980.19089895570170504No Hit
GGTTGG139830.19069439188290768No Hit
TTGGGG139650.19044891530035082No Hit
GGGTGT139140.18975339831643975No Hit
TGGCGG138680.18912606927212783No Hit
TAGGGG134970.18406652415387292No Hit
GTGGTG133410.18193906043838026No Hit
GGGTGA130760.17832509963962676No Hit
TGGTGG130020.1773159181335597No Hit
TCGGGG127640.17407017220864146No Hit
TGCGGG126830.17296552758713565No Hit
GGTGGT126650.17272005100457882No Hit
AGGGTG125710.1714381177401153No Hit
ATGGGG125520.17117900356963864No Hit
GGTGTG125160.17068805040452495No Hit
GTGGGT124880.17030619794276985No Hit
GGGGTA122910.16761959312256441No Hit
GGCTGG122800.16746957965544634No Hit
CGGGGT122250.166719512319856No Hit
CGCGGG119910.16352831674661703No Hit
GAGTGG117890.16077352398681247No Hit
GCTGGG117670.1604734970525763No Hit
GGCGTG117440.16015983253042035No Hit
GGGCCG117090.1596825169532265No Hit
GCGGGT116920.15945067795858947No Hit
AGTGGG116020.15822329504580526No Hit
TGGGTG114840.15661405967126596No Hit
CCGGGG114300.1558776299235954No Hit
GTCGGG112430.1533274009825882No Hit
GTGCGG111000.1513772259100533No Hit
CGGTGG110840.1511590245033361No Hit
GAGGGT110780.15107719897581715No Hit
CGGGTG108250.14762688923210152No Hit
AGAGGG108000.1472859495341059No Hit
GGGCGT107670.14683590913275169No Hit
GGGGGC107190.14618130491260012No Hit
GGCGGT107170.14615402973676045No Hit
TGAGGG105310.14361743838367308No Hit
GGGGCA104370.14233550511920956No Hit
TGGGAG104230.142144578888332No Hit
GTGAGG103980.1418036391903364No Hit
CAGGGG103840.14161271295945888No Hit
GGTCGG103270.14083537044802885No Hit
GTGGGA103260.14082173286010904No Hit
GAGAGG103210.1407535449205099No Hit
GGGTCG102250.13944433648020674No Hit
TGGAGG101410.13829877909494148No Hit
GGGCTG101260.1380942152761441No Hit
AGGTGG99860.13618495296736866No Hit
GGTAGG99810.13611676502776954No Hit
GAGGTG99440.135612174274736No Hit
CTGGGG99190.13527123457674042No Hit
AGGGGT99150.1352166842250611No Hit
GCCGGG99110.13516213387338183No Hit
GCGTGG98910.13488938211498533No Hit
TTTGGG98560.13441206653779145No Hit
GGGGAT98400.13419386513107429No Hit
TGGGCG98050.1337165495538804No Hit
CGTGGG97010.13229824041021865No Hit
GATGGG96960.1322300524706195No Hit
GGAAGG96540.1316572737779869No Hit
GGCAGG96540.1316572737779869No Hit
GTAGGG96490.13158908583838774No Hit
GGCCGG96070.13101630714575513No Hit
GGTGGA95290.1299525752880088No Hit
ACGGGG94900.12942070935913566No Hit
GCGGTG94190.12845244061682812No Hit
GGGAGT93680.12775692363291705No Hit
GTGGCG93560.12759327257787914No Hit
GGATGG93370.1273341584074025No Hit
AGCGGG92930.12673410453893022No Hit
AGGGAG92530.12618860102213722No Hit
GGAGTG92450.1260795003187786No Hit
GGGGCT91540.12483847981807458No Hit
GTGGAG90100.12287466715761983No Hit
GGAGGT88190.12026988786493333No Hit
AAGGGG88140.12020169992533422No Hit
GTTGGT87640.11951982052934298No Hit
AGGCGG87240.11897431701254998No Hit
GAGGAG86870.11846972625951648No Hit
GGTGAG86560.11804696103400192No Hit
GCGCGG86360.11777420927560542No Hit
GGTTTG85450.11653318877490138No Hit
TGGGGA85430.11650591359906173No Hit
GGCGAG83640.11406478536141312No Hit
AGGAGG83420.113764758427177No Hit
GGGATG82940.11311015420702539No Hit
GGGAAG82330.1122782613439161No Hit
TTGGTG82280.11221007340431698No Hit
GCGAGG80250.10944164305659257No Hit
CGGCGG80240.10942800546867276No Hit
GGACGG79590.10854156225388416No Hit
CGGGCG79120.1079005956216524No Hit
GGTTGT79030.10777785733037397No Hit
GAGGCG78950.10766875662701539No Hit
GAAGGG78810.10747783039613784No Hit
GGGACG78470.10701415240686381No Hit
GCAGGG77430.10559584326320204No Hit
CGGGGA77360.10550038014776326No Hit
GGAGGA77340.10547310497192362No Hit
GGGGAA77100.10514580286184781No Hit
GGTGCG76380.10416389653162045No Hit
TGGTTG76160.10386386959738432No Hit
GCGGGA75720.10326381572891204No Hit
GGGCAG75330.10273194980003886No Hit
TGTGGT74970.10224099663492518No Hit
CGAGGG74650.10180459382149079No Hit
GAGGGA74340.10138182859597622No Hit
TGGTGT74260.10127272789261764No Hit
ATCGGG74010.10093178819462201No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)