FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9188873
Sequences flagged as poor quality0
Sequence length6
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG805570.8766798714053399No Hit
GGGGGT371060.4038144830165788No Hit
GTGGGG327050.3559195997158737No Hit
GGGTGG322580.3510550205667224No Hit
GGGGCG310950.33839840859700643No Hit
GGGGTG310820.3382569331407671No Hit
TGGGGG309370.33667893766732876No Hit
GCGGGG307990.33517712128571153No Hit
GGGGGC306290.3333270576271976No Hit
GGGCGG305510.33247820488976176No Hit
CGGGGG304790.33169464851674413No Hit
GGCGGG304580.3314661112412806No Hit
GGTGGG295320.32138870566608113No Hit
GAGGGG280870.3056631645687126No Hit
GGGGGA272860.29694609991889104No Hit
AGGGGG265460.28889288164065385No Hit
GGGGAG259640.28255913429209434No Hit
GGGAGG259350.2822435351974067No Hit
GGAGGG246040.2677586250239828No Hit
GGGGTT171900.1870740840579688No Hit
GGGTGT168260.18311277128326836No Hit
CGGGGT162400.17673549302509678No Hit
GGGCGT150550.16383946105251426No Hit
GGGGTC148410.1615105573882673No Hit
TGGGGT146530.15946460463649895No Hit
GTGGGT146320.15923606736103546No Hit
GGTGTG145970.15885517190192966No Hit
GTTGGG145770.1586375173538692No Hit
GGGGCT145030.15783219552604547No Hit
TGGTGG144120.15684186733237038No Hit
GTGTGG143060.1556882982276499No Hit
TTGGGG140290.15267378273701246No Hit
GCTGGG138620.1508563672607076No Hit
GTGGTG138210.15041017543718363No Hit
GCGGGT138020.1502034036165262No Hit
TGTGGG137960.15013810725210808No Hit
GGCGGT135950.14795067904410042No Hit
GGTGGT135460.14741742540135228No Hit
CCGGGG134180.1460244362937653No Hit
TGGGGC133970.1457958990183018No Hit
GGTTGG133150.1449035153712539No Hit
GGTCGG131620.14323845807859137No Hit
GGGTTG131410.14300992080312785No Hit
GAGGGT131040.142607259889216No Hit
GTGGGC130800.14234607443154346No Hit
GGGGAT129760.14121427078162904No Hit
GTGGCG129680.14112720896240485No Hit
GGGTCG129030.14041983168120833No Hit
CGCGGG128810.14018041167834183No Hit
CTGGGG127060.13827593438281277No Hit
CAGGGG125670.13676323527379255No Hit
GTCGGG124440.13542465980322071No Hit
AGGGGT124390.13537024616620558No Hit
TGGCGG124120.13507641252632396No Hit
GGAGTG123830.1347608134316363No Hit
GGGGTA123690.13460845524799397No Hit
TCGGGG123280.13416226342447002No Hit
GGGCCG123260.13414049796966396No Hit
ATGGGG123110.1339772570586186No Hit
GGTGCG123010.13386842978458838No Hit
GTGGGA122850.13369430614614No Hit
GGCCGG122160.13294339795533142No Hit
GCGCGG122020.1327910397716891No Hit
GGGGCA121950.13271486067986793No Hit
GGCTGG120240.13085391429395093No Hit
GCCGGG120140.13074508701992074No Hit
AGTGGG119800.13037507428821793No Hit
GGGTAG119160.12967857973442443No Hit
GCGGGC117840.1282420597172254No Hit
GATGGG117290.1276435097100591No Hit
TGGGTG117240.127589096073044No Hit
GGGGCC116970.12729526243316236No Hit
GGGGAA116890.1272082006139382No Hit
TGCGGG116600.1268926015192505No Hit
GGCGCG116530.12681642242742935No Hit
GGTGGC116150.12640287878611448No Hit
GGTGAG115670.12588050787076935No Hit
GGATGG115300.12547784695685751No Hit
ACGGGG114860.12499900695112447No Hit
GAGCGG114680.12480311785787006No Hit
TGGGAG114530.12463987694682471No Hit
CGGGTG114500.12460722876461565No Hit
CGGTGG113160.12314894329261053No Hit
GCGTGG112900.12286599238013193No Hit
GGCGTG112740.12269186874168354No Hit
GGAGGT112600.12253951055804123No Hit
GGGCTG112000.12188654691385983No Hit
TAGGGG111160.12097239781200589No Hit
CGTGGG110750.12052620598848195No Hit
GGGCAG110470.1202214896211973No Hit
GCGGTG110470.1202214896211973No Hit
GTGGAG110180.11990589052650961No Hit
CGGCGG110150.11987324234430054No Hit
CGGAGG109730.11941616779337356No Hit
GAGGTG109490.11915498233570103No Hit
GGTAGG109370.11902438960686473No Hit
GGGTGA109310.11895909324244659No Hit
GGGGAC109130.11876320414919217No Hit
GGGAGT108830.11843672232710149No Hit
GGGATG108390.11795788232136846No Hit
GTGCGG108350.11791435141175638No Hit
GGGTGC108090.11763140049927776No Hit
GGGACG107860.11738109776900822No Hit
AGGTGG107780.11729403594978405No Hit
GACGGG107760.11727227049497799No Hit
TGGAGG107510.11700020230990243No Hit
AGAGGG107040.11648871412196034No Hit
GGCGGC106550.1159554604792122No Hit
GAGGGC106130.11549838592828522No Hit
GAGTGG106080.1154439722912701No Hit
CGGGGA106020.11537867592685197No Hit
GGTGGA106020.11537867592685197No Hit
AGGGTG104630.11386597681783174No Hit
TGAGGG104480.11370273590678638No Hit
GGGAAG104430.11364832226977127No Hit
GGAAGG103930.11310418589962011No Hit
GCAGGG103730.11288653135155964No Hit
AGGGCG103450.112581814984275No Hit
GGCGGA102980.1120703267963329No Hit
GTAGGG102790.11186355497567546No Hit
AAGGGG102770.11184178952086943No Hit
GAAGGG102620.11167854860982408No Hit
TGGGCG102530.11158060406319686No Hit
GGGCGC102370.11140648042474849No Hit
GGGAGC102270.11129765315071825No Hit
GTGAGG101010.10992642949793734No Hit
CGGGCG100410.10927346585375596No Hit
CGGGGC99710.10851167493554432No Hit
GGACGG99590.10838108220670806No Hit
AGGCGG99100.10784782856395991No Hit
GAGGCG99080.10782606310915385No Hit
AGCGGG98740.10745605037745108No Hit
GAGAGG98350.10703162400873317No Hit
TGGGGA98070.10672690764144853No Hit
GCGGGA97560.10617188854389434No Hit
GGCAGG97460.1060630612698641No Hit
GAGGAG95770.10422388033875318No Hit
GCGGCG94680.10303766305182366No Hit
GCGAGG94540.10288530486818133No Hit
AGGGGA92260.10040404302029204No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)