FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4707818
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG320010.6797416552636487No Hit
GTGGGG165970.35254124097405637No Hit
GGGGGT150060.3187463916404585No Hit
TGGGGG147670.31366972979839064No Hit
GGGGTG143510.3048333644163814No Hit
AGGGGG140720.2989070520568127No Hit
GGGTGG137040.29109026729580456No Hit
GGTGGG134580.2858649166131741No Hit
CGGGGG129640.27537173272203813No Hit
GGAGGG126110.2678735669050928No Hit
GAGGGG121150.25733790048808175No Hit
GGCGGG121070.25716797038458156No Hit
GCGGGG118790.2523249624348265No Hit
GGGGAG111780.23743483711562344No Hit
GGGGGA111640.2371374594344981No Hit
GGGAGG110770.23528946955893368No Hit
GGGGCG109990.23363265104980693No Hit
GGGCGG105890.2249237332454228No Hit
GGGGGC98440.2090989923569688No Hit
GTGTGG89050.1891534464586354No Hit
GTTGGG81720.1735836007254316No Hit
GGGTGT80390.17075851275474116No Hit
GTGGGT79100.16801838983580078No Hit
GTGGTG77960.16559688586092325No Hit
GGGGTT77030.16362144840773368No Hit
ATGGGG76640.1627930391531703No Hit
GTAGGG75470.16030781138948022No Hit
GGGTTG74190.15758892973347738No Hit
GGTGGT73580.15629321269428853No Hit
TGGGGT72880.15480632428866195No Hit
TTGGGG71860.1526397154690347No Hit
AGGGGT71130.15108910327459557No Hit
AGGTGG70950.1507067605417202No Hit
TGGGTG70010.1487100818255931No Hit
GGGTAG69700.1480516026745299No Hit
TGGTGG69440.1474993298381543No Hit
GGTTGG68690.14590623511784015No Hit
GTCGGG68140.14473796565627645No Hit
TGTGGG67820.14405824524227573No Hit
GGGGTA66390.14102074464221004No Hit
CTGGGG66240.14070212569814722No Hit
CGGGGT64770.13757966004633143No Hit
GGATGG64500.13700614594701835No Hit
TAGGGG64430.1368574571064557No Hit
GTGGCG64170.13630518427008012No Hit
GGTGTG63530.13494574344207869No Hit
AAGGGG63340.13454215944626577No Hit
GTGAGG63000.13381995650639No Hit
GGTAGG62680.13314023609238929No Hit
AGTGGG62470.13269416957070135No Hit
GGAGGT61440.13050631948813654No Hit
GGGTGA60930.1294230150783229No Hit
TGAGGG58300.12383656292575455No Hit
GATGGG58180.12358166777050429No Hit
GGGGAT57850.12288070609356605No Hit
GGTGGA57800.12277449977887846No Hit
GAGGGT57570.12228595073131543No Hit
GGAGTG57510.12215850315369031No Hit
TGGGAG56990.12105395748093915No Hit
GTGGAG56910.12088402737743897No Hit
GGCGGT56870.12079906232568889No Hit
GTGGGA56680.12039547832987596No Hit
GAAGGG56530.12007685938581314No Hit
CAGGGG56430.11986444675643791No Hit
CGTGGG55630.11816514572143613No Hit
GCTGGG55420.11771907919974815No Hit
GGAAGG55280.11742170151862286No Hit
AGGGTG55000.11682694615637224No Hit
CGGTGG54810.11642336216055932No Hit
GGCTGG54700.11618970826824655No Hit
GGGGTC54610.11599853690180885No Hit
GGGGCT54110.11493647375493275No Hit
GTGCGG54040.1147877849143701No Hit
GCGGGT53850.11438420091855718No Hit
AGGAGG53740.11415054702624443No Hit
GGGATG53730.11412930576330692No Hit
GGGTCG53600.11385316934511912No Hit
TGGGGA53530.11370448050455645No Hit
GGGGAA52890.11234503967655503No Hit
GGGAGT52520.11155911294786672No Hit
GTGTTG52120.11070946243036583No Hit
CGGGTG52050.11056077358980318No Hit
GCAGGG51920.1102846371716154No Hit
ACGGGG51890.11022091338280281No Hit
AGGGGA51850.11013594833105274No Hit
GGTGAG51730.10988105317580245No Hit
GTGGGC51520.1094349866541145No Hit
GAGTGG51440.10926505655061432No Hit
TGGAGG51140.10862781866248865No Hit
AGAGGG51100.10854285361073855No Hit
TCGGGG50990.10830919971842581No Hit
CCGGGG50810.1079268569855504No Hit
GAGGTG50740.10777816814498775No Hit
TGGGCG50690.10767196183030016No Hit
GGCGTG49710.10559031806242297No Hit
TGCGGG49410.10495308017429732No Hit
GCGTGG49400.10493183891135979No Hit
GGTCGG49310.10474066754492209No Hit
AGCGGG48900.10386977576448367No Hit
GTTTGG48690.10342370924279572No Hit
GGGGCA48500.1030201252469828No Hit
GACGGG47580.10106592905673073No Hit
TGGCGG47550.10100220526791817No Hit
GGGCGT47390.10066234506091781No Hit
GTGGTT47150.10015255475041729No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)