FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8331756
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG406740.4881804027866395No Hit
GTGGGG224890.2699190902854092No Hit
GGGGGT208400.2501273441036919No Hit
GGGTGG201600.24196579928648898No Hit
GGGGTG197770.23736892919091726No Hit
TGGGGG194220.2331081227054657No Hit
AGGGGG193040.23169185463424516No Hit
GGTGGG187020.22446648701666252No Hit
CGGGGG174400.20931962001767696No Hit
GAGGGG170690.2048667771835853No Hit
GGAGGG164930.19795346863254276No Hit
GGGGAG163260.195949089243612No Hit
GGGGGA158910.1907281010149601No Hit
GCGGGG154440.18536308552482814No Hit
GGCGGG153990.18482298329427796No Hit
GGGAGG148520.17825774062514552No Hit
GGGGCG146770.17615734306189476No Hit
GTGTGG135080.1621266873393796No Hit
GGGCGG134800.16179062372925948No Hit
GGGGGC126990.15241684946126602No Hit
GTGGTG125490.15061650869276538No Hit
GGGTTG122220.14669176581743393No Hit
GGGGTT117570.1411107094350819No Hit
GTTGGG117280.14076264355317175No Hit
GTGGGT116350.13964643227670132No Hit
TTGGGG116200.13946639819985127No Hit
ATGGGG110760.13293716234608885No Hit
GGGTGT105980.12720007643046677No Hit
GGTGGT104570.12550775610807613No Hit
GTAGGG103900.12470360389814585No Hit
TGGTGG103030.12365940625241546No Hit
TGGGGT102580.12311930402186526No Hit
CTGGGG100800.12098289964324449No Hit
AGGGGT100540.12067084057670435No Hit
GGGTAG100090.12013073834615416No Hit
GGTTGG100090.12013073834615416No Hit
AGGTGG99730.11969865656171401No Hit
TGGGTG99580.11951862248486393No Hit
GGTGTG98250.11792232033679334No Hit
TGTGGG97750.11732220674729313No Hit
GTCGGG94570.11350548431807173No Hit
GTGGAG93980.11279735028246146No Hit
GGGGAT93880.11267732756456142No Hit
GTGAGG93120.11176515490852108No Hit
GGGATG92780.11135707766766094No Hit
TGAGGG91870.11026487093477053No Hit
GGGGTA90940.10914865965830013No Hit
GTGGGA89370.10726430298726942No Hit
AGGGTG89290.10716828481294939No Hit
CGGTGG89120.10696424619251932No Hit
CGGGGT89030.1068562257464093No Hit
AGTGGG88670.10642414396196911No Hit
GGATGG88560.10629211897227907No Hit
GAGGGT88180.1058360326442589No Hit
AAGGGG88180.1058360326442589No Hit
TAGGGG86990.10440776230124839No Hit
GTGGCG85290.10236737609694764No Hit
GGAGTG85180.1022353511072576No Hit
GAGTGG83920.10072306486171702No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)