FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10588640
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG415980.3928549842094924No Hit
GGGGGT269350.25437638828027015No Hit
GGGTGG262410.24782219435168254No Hit
TGGGGG250680.2367442844406836No Hit
GGTGGG239320.2260158056180964No Hit
GGGGTG216550.20451162755556898No Hit
CGGGGG214190.2022828238565104No Hit
AGGGGG213920.20202783360280452No Hit
GGGGAG206380.19490699466598166No Hit
GTGGGG200000.18888166941174692No Hit
GGGGTT192040.1813641789691594No Hit
GGGGGA185790.17546162680004232No Hit
GGTGGT183960.17373335952492483No Hit
GGGTTG183320.17312893818280725No Hit
GGGGGC177960.16806690944257244No Hit
GGTTGG176350.16654641200380788No Hit
GTGGGT175770.1659986551625138No Hit
GTTGGG167320.1580184046298675No Hit
GGGGCG166110.1568756705299264No Hit
TTGGGG165890.15666790069357348No Hit
TGGGGT154540.14594886595445686No Hit
GCGGGG152720.14423004276280996No Hit
GAGGGG148650.14038630079028092No Hit
GGGGCT148600.14033908037292797No Hit
GGAGGT147740.13952688919445744No Hit
GGGTGT145420.1373358618292812No Hit
AGGGGT145150.13708087157557533No Hit
TGGTGG143410.13543760105169314No Hit
GGCGGG142630.13470096254098732No Hit
TTGTGG141930.1340398766980462No Hit
GGGGTA139180.13144275374363468No Hit
AGGTGG138860.1311405430725759No Hit
GGTTTG137830.1301678024751054No Hit
GGGCGG137800.13013947022469363No Hit
GGGATG137580.12993170038834073No Hit
GGGTTT136940.12932727904622313No Hit
TTGGTT135730.12818454494628204No Hit
GTGTGG133750.12631461641910577No Hit
GGAGGG133270.12586130041251756No Hit
GGGGAT130760.12349083546140015No Hit
TGTGGG129080.12190422943834146No Hit
GGTTGT128320.12118647909457683No Hit
GGGCGT126760.11971320207316521No Hit
ATGGGG123830.11694608561628311No Hit
GGGAGG122100.11531225917587151No Hit
TGGGTG120620.11391453482222458No Hit
GTGGTG120310.11362176823463635No Hit
CGGGGT119420.11278124480575409No Hit
GGGGTC117170.11065632602487194No Hit
TTGGTG116150.10969302951087204No Hit
GGTGTT115500.10907916408528384No Hit
GGGTCG115280.10887139424893093No Hit
TCGGGG115020.10862584807869566No Hit
TGGGGC112280.10603816920775472No Hit
GGGTAG111840.10562262953504888No Hit
TGAGGG111320.10513153719457834No Hit
GTTGGT110810.10464988893757839No Hit
TTTGGG110550.10440434276734312No Hit
TGTTGG110210.10408324392934315No Hit
GAGGGT109660.10356381933846084No Hit
TAGGGG108500.10246830565587271No Hit
GTGGGC108270.1022510917360492No Hit
GATGGG107530.10155222955922573No Hit
GTGTTG107400.10142945647410809No Hit
ATGGGT106970.10102336088487285No Hit
AGTGGG106600.10067392979646111No Hit
GTTTGG106240.10033394279151996No Hit
GGGTAT105950.10006006437087292No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)