FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483135

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483135
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5991202
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG186420.31115625879414516No Hit
GTGGGG136190.2273166553222542No Hit
GGTGGG106110.1771097018594933No Hit
GGGTGG98190.1638903178360536No Hit
GGGGGT95520.15943378307057582No Hit
GGTGGT91160.15215644540110648No Hit
GTGGTG87130.1454299153992805No Hit
GGGGGC86360.14414469750811273No Hit
TGGGGG85380.14250896564662652No Hit
GAGGGG84730.14142404145278362No Hit
TTGGGG84670.14132389460412118No Hit
AGGGGG84210.14055610209770927No Hit
GGGCGG81760.13646677244399372No Hit
GGGGAG80260.13396310122743316No Hit
GGGGTG78780.1314928122937601No Hit
GCGGGG77740.12975693358361143No Hit
GGGGCG77570.1294731841790679No Hit
GGGGGA77090.12867200938976853No Hit
GGTGTG74700.1246828265847154No Hit
GTGTGG73640.12291356559167926No Hit
GCTTGG69930.11672115211605284No Hit
GGGGTT67180.11213108821902515No Hit
GGCGGG67010.11184733881448164No Hit
GTTTGG66970.11178057424870667No Hit
GGAGGG66950.11174719196581921No Hit
TGTGGG65910.11001131325567057No Hit
ATGGGG65500.10932697645647735No Hit
GGGTTG65320.10902653591049008No Hit
CTGGGG64870.10827543454552191No Hit
GTGGGC62170.10376882635571291No Hit
GGTTGG61320.10235007933299528No Hit
AAGGGG60280.10061420062284664No Hit
TGGGGA60140.1003805246426343No Hit
ATGTGG60050.10023030436964069No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)