FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14709447
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG456600.3104127571893084No Hit
GGGGGT270310.18376625579466038No Hit
GGGGTG268890.18280088979551712No Hit
GGTGGG261620.17785848781398786No Hit
GCGGGG249020.16929256415961796No Hit
CGGGGG245200.16669559365488043No Hit
GTGGGG241850.1644181456991551No Hit
GGGTGG239200.16261658239089477No Hit
AGGGGG225460.1532756465963676No Hit
TGGGGG225340.1531940663710879No Hit
GGCGGG224280.15247344104778376No Hit
GGGCGG222690.1513925030628276No Hit
GGAGGG195240.13273102653009322No Hit
GGGGGA192970.1311878006018853No Hit
GAGGGG183500.12474976115689461No Hit
GGGGGC182350.1239679506646307No Hit
GGGGCG178040.12103786090666767No Hit
GGGGAG177730.12082711199136173No Hit
GGGAGG177410.12060956472394917No Hit
GGGTGT172020.11694525293846872No Hit
GTGGTG169940.11553119570028704No Hit
GTGTGG169350.11513009292599512No Hit
TGTGGG169320.11510969786967518No Hit
GGGGTT164420.11177850533742023No Hit
TGGGTG158980.10808020179140657No Hit
TTGGGG154510.10504133839973726No Hit
GGGTTG153760.10453146199173906No Hit
GGGCGT153620.10443628506224606No Hit
TGGGGT153230.10417114933008699No Hit
TGGTGG149190.10142461507900331No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)