FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10564022
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG561180.5312181288528176No Hit
GGGTGG275330.260629900240647No Hit
GGGGGT264470.2503497247544543No Hit
AGGGGG256970.24325015604852018No Hit
GTGGGG250490.23711612868659304No Hit
GGTGGG248570.2352986390978739No Hit
GCGGGG244260.23121875361486374No Hit
GGGGTG240990.2281233416590764No Hit
TGGGGG237580.22489540442077838No Hit
CGGGGG235940.22334296539708076No Hit
GGAGGG230870.21854365695186928No Hit
GGGCGG228210.21602567658416463No Hit
GGGGGC226350.21426498354509296No Hit
GGCGGG225130.21311012036892765No Hit
GGGGCG214840.203369512104386No Hit
GGGGGA214670.20320858854705148No Hit
GAGGGG213050.2016750817065697No Hit
GGGGAG211830.20052021853040444No Hit
GGGAGG188010.17797198832035754No Hit
GGTGGT152010.14389405853187356No Hit
GGGTGT137790.1304332762654224No Hit
GGCGGT135300.12807621945505226No Hit
GGGGTT135280.12805728727183643No Hit
GGGCCG131250.1242424523538478No Hit
TGTGGG128920.12203685300920426No Hit
AGGGTG128210.1213647605050425No Hit
GGTGTG127650.12083465937499942No Hit
TGGGGT126190.11945261000024424No Hit
GTGGTG125650.11894144105341696No Hit
GTCGGG123610.11701035836540288No Hit
GTGGGT123100.11652758769339934No Hit
GCTGGG122800.11624360494516199No Hit
GGGCGT121690.11519286877668374No Hit
GGGTAG121050.11458703891377735No Hit
TTGGGG120530.1140948021501659No Hit
TGGGTG120450.11401907341730261No Hit
GGGTTG120310.11388654813479185No Hit
GCGTGG120150.11373509066906526No Hit
CGGTGG119790.11339431137118042No Hit
ATGGGG118970.11261809185933161No Hit
GGCCGG118270.11195546544677776No Hit
GGGGTA117740.1114537625915584No Hit
GCGGGT117700.11141589822512676No Hit
TGGTGG117610.11133070340065554No Hit
GGGTCG117470.11119817811814478No Hit
GCCGGG117410.1111413815684973No Hit
AGGTGG117300.11103725456081026No Hit
GGTTGG116730.11049768733915927No Hit
CGGGGT116060.10986345920142916No Hit
GTGTGG114950.10881272303295089No Hit
GGGATG114670.10854767246792935No Hit
GTTGGG113620.10755373284909858No Hit
GGCTGG113240.10719402136799791No Hit
AGCGGG112550.10654086104705197No Hit
CCGGGG111710.10574570935198734No Hit
AGGGGT110720.10480856628280404No Hit
GGGAAG110700.10478963409958822No Hit
GGAAGG110610.104704439275117No Hit
GCGCGG109770.10390928758005236No Hit
GGGGCC109510.10366316919824664No Hit
GGAGGT109490.10364423701503082No Hit
CAGGGG109470.10362530483181501No Hit
GGCAGG108430.10264083130459213No Hit
GGCGCG106830.10112625664732618No Hit
GCGGTG106370.10069081643336222No Hit
GGTAGG106320.10064348597532266No Hit
GGGGTC105880.10022697794457452No Hit
GTGGAG105690.10004712220402419No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)