FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8635153
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG519370.601460101517599No Hit
GCAATT335360.38836601968720186No Hit
TGGGGG292410.33862746844207625No Hit
GCGGGG272440.31550106871296896No Hit
CGGGGG267840.310174006181477No Hit
GGGGGT262720.3042447539725121No Hit
GGGGCG252720.29266418325187754No Hit
AGGGGG239710.2775978607443319No Hit
GGGTGG236640.2740426255330971No Hit
GGGCGG235260.2724445067736495No Hit
GGGGTG230760.2672332499493639No Hit
GTGGGG216080.2502329721314724No Hit
GGCGGG214170.24802108312383117No Hit
GGGAGG212870.24651560893014868No Hit
GGGGGC212080.2456007438432185No Hit
GGAGGG209200.24226553947567578No Hit
GGGGAG208530.24148964123739325No Hit
GAGGGG199540.23107870815954273No Hit
GGTGGG190340.2204245830965589No Hit
GGGGGA173570.2010039659980547No Hit
GGCCGG148780.17229573118160152No Hit
GGGGTT141190.16350607800463987No Hit
AGCGGG140010.162139570659605No Hit
GGCTGG138360.16022877649070028No Hit
CGGTGG129300.14973677941780533No Hit
CCGGGG129270.14970203770564344No Hit
GGGTGT128450.14875243090655138No Hit
GTGGGT126400.1463784139088213No Hit
GGTGGT122510.14187357189849445No Hit
GGGTTG121870.1411324153723738No Hit
CGGGCG121830.1410860930894913No Hit
GCCGGG119040.13785511385843424No Hit
GTGTGG116900.13537687172421844No Hit
TGTGGG116850.13531896887061526No Hit
ATGGGG115830.13413775065711053No Hit
ACGGGG114730.13286388787784073No Hit
GAGGGT113960.13197218393235188No Hit
GGGGCT113870.13186795879586616No Hit
TCGGGG113360.1312773496891138No Hit
CGGGGT112770.13059409601659636No Hit
GCGCGG112690.13050145145083125No Hit
GGTTGG112580.13037406517290429No Hit
GGGTAG109750.1270967636589647No Hit
CGGCGG109130.12637876827428535No Hit
TGGCGG107980.12504700264141239No Hit
TGGAGG107620.12463010209546953No Hit
GGTGTG107030.12394684842295209No Hit
AGTGGG106710.1235762701598918No Hit
AGGGTG106490.12332149760403781No Hit
GCGGAG106280.1230783056189045No Hit
TGGGGC106240.12303198333602194No Hit
CAGGGG106130.12290459705809498No Hit
GACGGG105880.12261508279007911No Hit
GGCAGG105280.12192024854684104No Hit
GGCGTG104760.12131805886936803No Hit
GGGCCG104500.12101696403063154No Hit
TAGGGG103640.12002103494865696No Hit
CGCGGG102280.11844607733065066No Hit
GTCGGG102270.11843449675993004No Hit
GAGGTG101190.11718379512210149No Hit
GGCGGT101140.11712589226849832No Hit
GGGAGT100460.11633841345949517No Hit
GGGGTA98880.1145086832856349No Hit
TGGGGT98730.11433497472482539No Hit
GTGAGG98680.11427707187122221No Hit
GGAAGG98230.11375594618879366No Hit
TTGGGG97790.11324640107708572No Hit
GGGGCC95570.11067551437710485No Hit
GGGTCG94780.1097606492901747No Hit
TGGGTG94350.10926268474918742No Hit
GGGTGC94310.1092163624663049No Hit
GTGGCG94100.10897317048117156No Hit
GGTGCG93330.1080814665356827No Hit
GCGGGT93260.10800040254063825No Hit
GTTGGG93230.10796566082847635No Hit
GCGTGG93180.10790775797487318No Hit
GGGCAG93160.1078845968334319No Hit
GGGCGT92700.10735189058028272No Hit
CGGGTG92500.10712027916587002No Hit
GGCGGA92220.10679602318569226No Hit
GCGGTG92170.10673812033208908No Hit
GATGGG91690.10618225293749861No Hit
GGGCTG91630.10611276951317482No Hit
GAGCGG91630.10611276951317482No Hit
GGAGTG91230.10564954668434942No Hit
GCTGGG91010.10539477412849546No Hit
GCGGGC90820.10517474328480342No Hit
GGGGAT90570.10488522901678755No Hit
GGTGAG90490.10479258445102246No Hit
GGCGCG90460.10475784273886056No Hit
GGGCGC90040.10427145876859391No Hit
GGGGAA89750.10393562221769549No Hit
TGGTGG89320.10343765767670823No Hit
GGCTGT89200.10329869082806059No Hit
CGGAGG87960.10186270005870192No Hit
AGGGCG87100.10086677097672733No Hit
GGGGCA87080.10084360983528608No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)