FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7764951
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG216100.27830182057813374No Hit
GGGTGG151470.19506884203132768No Hit
GGGCGG139560.17973068986526766No Hit
GGTGGG136720.1760732295670636No Hit
GGGGCG133780.1722869854555425No Hit
CGGGGG128080.16494630809647093No Hit
GGCGGG127070.16364559158196876No Hit
GGAGGG124810.16073507740100357No Hit
GGGGGC124750.16065780711301333No Hit
TGGGGG123450.15898361753989174No Hit
GTGGGG122460.15770865778805299No Hit
GGGGGT116980.15065130481827896No Hit
GGGGGA114560.1475347365360065No Hit
GGGGTG111360.14341365450986104No Hit
GCGGGG109090.14049026194756414No Hit
AGGGGG108760.14006527536361787No Hit
GGGGAG106420.13705173413199903No Hit
GAGGGG103580.13339427383379496No Hit
GGGAGG87530.11272447179640928No Hit
GGCCGG84740.10913140340486373No Hit
GGCTGG80190.10327173989893819No Hit
GGGGCC79580.10248615863770422No Hit
GGGCCG78580.10119832050453376No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)