FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15652568
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG561980.359033738106105No Hit
GGGGGT403550.2578171198489603No Hit
GGGGTG396190.2531150160152634No Hit
GTGGGG390280.2493392777466292No Hit
TGGGGG384050.2453591001808777No Hit
GGGTGG379130.2422158459876999No Hit
GGTGGG373980.2389256510497191No Hit
CGGGGG289040.18465979512115838No Hit
GGTGGT284230.1815868169363647No Hit
GGGAGG283460.1810948848776763No Hit
AGGGGG273700.17485948631560008No Hit
GGCGGG272400.17402895167106125No Hit
GAGGGG267950.17118596769552447No Hit
GGGGTT263450.1683110400798131No Hit
GCGGGG262180.167499671619379No Hit
GTTGGG255470.16321283510795162No Hit
GGGTTG253950.16224174844664466No Hit
TTGGGG248650.15885572258814018No Hit
GGGCGG247200.15792935702307762No Hit
TGGGGT242540.15495220975880764No Hit
GGGTGT241140.15405778783391966No Hit
GGAGGG236770.15126591368266215No Hit
GGGGCG234560.14985400478694616No Hit
TGTGGG229690.14674269423394296No Hit
GGTTGG229440.1465829760330701No Hit
TGGTGG227540.1453691177064364No Hit
GTGTGG227150.14511995731307475No Hit
GTGGGT225430.14402109609106953No Hit
GGGGAG223320.14267307447570265No Hit
GGGGGC220080.14060312659239046No Hit
GGTGTG216530.13833512813999593No Hit
GGGGGA216380.13823929721947223No Hit
GTGGTG210520.13449550259101256No Hit
TGGCGG205410.1312308625651714No Hit
GGATGG201780.1289117542884976No Hit
AGGGGT201450.12870092626334542No Hit
TGGGTG200070.12781928179452726No Hit
GATGGG199150.12723151881531516No Hit
GGGGTA195480.12488685562650166No Hit
GGCGGT190370.12162221560066055No Hit
CGTGGG188770.12060001911507429No Hit
ATGGGG186030.11884950763350781No Hit
GGGCGT183620.11730982417709349No Hit
GGTTGT181780.1161342982186693No Hit
TAGGGG180330.11520793265360674No Hit
GGGGCT177760.1135660295486338No Hit
GTTGGT177670.11350853099631958No Hit
TCGGGG177630.11348297608417993No Hit
TGGGGA177460.1133743677075864No Hit
TGGTTG177110.1131507622263644No Hit
GGTGTT176400.11269716253588548No Hit
GGCCGG175620.11219884174916217No Hit
GTTTGG174880.11172607587457853No Hit
GGTCGG174730.11163024495405482No Hit
GTCGGG174440.11144497184104232No Hit
GGAGGT173700.11097220596645867No Hit
TGAGGG173670.11095303978235392No Hit
GTAGGG172220.11002667421729137No Hit
AGGTGG170900.10918336211668271No Hit
CGGGTG169120.10804616852646799No Hit
CGGGGT167120.10676842291948516No Hit
GCTGGG166340.10627010213276186No Hit
GGCTGG165320.10561845187320061No Hit
GCGGTG165050.10544595621625794No Hit
TTGGTG163840.10467292012403331No Hit
CGGTGG162200.1036251687263074No Hit
GCGTGG161370.10309490429940953No Hit
TGTGGT161250.10301823956299055No Hit
TGTGTG161010.10286491009015263No Hit
TTTGGG159770.10207270781382326No Hit
GGTTTG158700.10138911391408745No Hit
TTTGGT157110.1003733061565361No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)