FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70797789
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG4776020.6746001630079155No Hit
GGGGGT2446560.3455701137785532No Hit
TGGGGG1983950.28022767773157436No Hit
GCGGGG1932360.27294072700490685No Hit
CGGGGG1898640.2681778664020143No Hit
GGGGTG1860120.26273701852468867No Hit
GGTGGG1838920.2597425747292758No Hit
GGGCGG1818590.2568710161273539No Hit
AGGGGG1817940.2567792053506078No Hit
GGGTGG1786080.25227906481655804No Hit
GTGGGG1780890.2515459910760773No Hit
GGGGCG1749490.24711082432249404No Hit
GGGGAG1632970.23065268323563043No Hit
GGGAGG1626280.22970773847188927No Hit
GAGGGG1616510.22832775187372023No Hit
GGCGGG1585550.22395473395362672No Hit
GGGGGA1562330.22067497051355658No Hit
GGAGGG1503250.21233007714407579No Hit
GGGGGC1312750.18542245719001196No Hit
GGGTTG1104550.15601475916147606No Hit
GGGGTT1099300.15527321058006485No Hit
TGGGGT1061640.1499538354227418No Hit
CGGGGT1019280.14397059772586965No Hit
GGGTGT1015180.14339148359562473No Hit
GGTTGG1008470.14244371388490676No Hit
GGCTGG1001550.14146628223093238No Hit
GGGGCT994870.14052274994067965No Hit
GGTGGT986880.1393941836234462No Hit
TGGTGG975260.13775288942992273No Hit
TTGGGG960790.1357090402922046No Hit
GGCCGG953460.13467369722520572No Hit
GGGTAG944400.13339399624471324No Hit
CCGGGG936410.1322654299274798No Hit
GTGGGT924820.13062837315442152No Hit
GTGGTG908570.12833310373576778No Hit
AGGGGT904950.12782178833296617No Hit
GGGCCG899590.12706470254318253No Hit
GTTGGG887010.12528781089477242No Hit
GGGCGT883860.12484288174592571No Hit
GGGTCG877220.12390499934962658No Hit
ATGGGG874670.123544818610084No Hit
GGGCTG872360.12321853723426307No Hit
GCCGGG872310.12321147486682106No Hit
GCGGGT869010.12274535861564831No Hit
GGGGAT865110.1221944939551714No Hit
TCGGGG863830.12201369734865591No Hit
GGCGGT862890.12188092484074609No Hit
AGGTGG859680.12142752085096895No Hit
TAGGGG851770.12031025432164273No Hit
TGGGTG849420.11997832305186819No Hit
TGTGGG846680.11959130531604596No Hit
GGGGTA845540.11943028333836811No Hit
CTGGGG843290.11911247680347757No Hit
GTCGGG843270.11910965185650077No Hit
GCTGGG841850.11890908062114766No Hit
GAGGGT839240.11854042504067465No Hit
GCGGTG838960.11850087578299938No Hit
ACGGGG833730.11776215214856497No Hit
GGCAGG828400.11700930377924654No Hit
GGATGG827680.11690760568808159No Hit
GTGTGG824470.11645420169830445No Hit
GGGAGT816270.11529597343781456No Hit
GCAATT807770.11409537097267261No Hit
GGTCGG795250.11232695416519294No Hit
AGGGTG781180.1103396039670109No Hit
CGGTGG778520.10996388601909589No Hit
GCGCGG777370.10980145156792961No Hit
GGGGTC772530.1091178143995429No Hit
GTAGGG771940.10903447846372716No Hit
TGGCGG769780.10872938419023226No Hit
GCAGGG766330.10824208083673348No Hit
GTGGCG764700.1080118476581239No Hit
TGAGGG757730.1070273536367075No Hit
AAGGGG757100.10693836780693816No Hit
GGGCAG757010.10692565554554254No Hit
GGTAGG751340.10612478307761844No Hit
GGAGGT746360.10542137128039408No Hit
GGGGCA743600.10503152859759504No Hit
GCGTGG734870.10379843924221983No Hit
CGCGGG733610.10362046758268113No Hit
GGGATG731920.10338175956314116No Hit
TGCGGG727640.10277722091010498No Hit
CGGGTG722250.10201589769985614No Hit
GGTGTG721620.10192691187008679No Hit
GGTGAG711710.1005271506430801No Hit
GGGGCC709140.10016414495656072No Hit
GTGGAG708320.10004832213051174No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)