FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10062237
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG467000.46411150920019073No Hit
GGGGGT309280.30736703975467883No Hit
GGGGTG269300.26763432425612715No Hit
GGGTGG269270.2676045098122813No Hit
TGGGGG266430.26478207579487545No Hit
GTGGGG253190.25162396791091285No Hit
GGTGGG250260.2487120905619695No Hit
CGGGGG203250.20199285705554343No Hit
AGGGGG194560.19335660648819938No Hit
GGGTGT191390.19020621358848933No Hit
GCGGGG183290.18215631375011343No Hit
GGGAGG179260.17815124012682268No Hit
TGGGGT177910.17680959015376002No Hit
GGGGGC177850.17674996126606837No Hit
GGGCGG176990.1758952805424877No Hit
GTGGGT173770.1726951969030346No Hit
TGTGGG171630.17056843324203158No Hit
GGGGTT170130.16907771104973973No Hit
GGTGTG168980.16793482403564933No Hit
GGGGCG168010.16697082368463395No Hit
GGGGAG167730.1666925555420728No Hit
GGCGGG166860.16582793667054355No Hit
GAGGGG166100.165072637426449No Hit
GGTTGG165650.16462542076876144No Hit
GGTGGT164800.16378067819312941No Hit
GGGGGA161600.1606004708495735No Hit
GTGTGG160190.15919919198881918No Hit
TTGGGG156210.15524380910527152No Hit
GGGTTG155660.15469721096809785No Hit
GTTGGG154870.15391209728015748No Hit
TGGGTG154610.15365370543349355No Hit
GGAGGG154180.15322636507170323No Hit
TGGTGG153900.1529480969291421No Hit
GTGGTG142310.14142978345670051No Hit
AGGGGT141740.14086330902362965No Hit
GGCTGG131500.13068664552425072No Hit
CGGGGT128070.12727786077787673No Hit
GGGTTT124390.12362062233278744No Hit
GGGCGT124130.12336223048612352No Hit
GAGGGT120990.12024165203025927No Hit
TGCGGG120900.12015220869872176No Hit
ATGGGG120510.11976462092872589No Hit
TGGGTT118850.11811488836925627No Hit
AGGTGG118340.11760804282387703No Hit
GTGTGT117610.11688255802362833No Hit
GGGGAT117490.116763300248245No Hit
GGGTAG116720.11599806285620186No Hit
CTGGGG116360.11564028953005182No Hit
GGCGGT115970.11525270176005595No Hit
GGGGTC115500.11478560880647116No Hit
GTAGGG115200.1144874643680128No Hit
TCGGGG113830.11312593809905291No Hit
TGGTGT113680.11297686587982375No Hit
GGGGCT112600.11190354590137364No Hit
GGTCGG111940.11124762813676521No Hit
GGTAGG111620.11092960740240962No Hit
GCGGGT111180.11049232889267069No Hit
GGAGGT110760.11007492667882897No Hit
TGTGGT109900.1092202459552483No Hit
TGTTGG109280.10860408078243436No Hit
TGAGGG109240.10856432819063991No Hit
AGTGGG108810.10813698782884959No Hit
CGGTGG108570.1078984722780829No Hit
GGTGTT108490.107818967094494No Hit
TTGGGT107300.10663632748860914No Hit
TGGTTG106750.10608972935143546No Hit
GGTTGT105960.10530461566349511No Hit
GGGGTA105510.10485739900580755No Hit
GGGTCG104610.10396296569043245No Hit
TTTGGG104580.10393315124658663No Hit
GGGAGT104060.10341636755325878No Hit
AGGGTG103860.10321760459428653No Hit
TAGGGG103560.10291946015582817No Hit
GTTGGT103280.10264119201326702No Hit
TGGGCG103140.10250205794198645No Hit
GGATGG103070.10243249090634618No Hit
GGGTGA102920.10228341868711699No Hit
TTGTGG102810.10217409905968226No Hit
GTGGTT102780.10214428461583641No Hit
GTGGAG102550.10191570721301835No Hit
GCGTGG101400.10077282019892793No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)