FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2500701
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATTT257851.0311108765102266No Hit
GTGGGG48220.1928259316087769No Hit
GGGGGG47990.19190618950446295No Hit
GGGGGT44530.1780700691526096No Hit
GGGGTG41470.16583350028651966No Hit
GGGTGG37870.15143753691464912No Hit
GGTGGG37740.15091768268177605No Hit
GTGGGT37520.15003792936460617No Hit
GTGGTG37080.14827842273026642No Hit
TGGGGG35940.14371970099584078No Hit
GTTGGG35530.1420801607229333No Hit
GGAGGG34680.1386811138156861No Hit
GGGAGG33340.13332261633837872No Hit
GGGGTT32890.13152312091689491No Hit
TTGGTT32820.1312431994068863No Hit
GGGTGT31960.127804163712495No Hit
GTTTTT31950.12776417492535092No Hit
GGTGGT31050.12416518408238329No Hit
GGGTTG30380.12148593534372962No Hit
TGTGGG30020.12004633900654256No Hit
TGCAAT30010.12000635021939848No Hit
GGGGGC29600.118366809946491No Hit
GTTGGT29580.11828683237220282No Hit
CGGGGG29210.1168072472478717No Hit
TGGGTT29170.11664729209929535No Hit
TTTTTT29120.11644734816357494No Hit
GGGTGC29100.11636737058928677No Hit
GGGTTT28830.11528767333639647No Hit
TTTGGG28380.11348817791491267No Hit
GTGGTT28170.11264841338488688No Hit
GGTTGG27470.10984919828480094No Hit
TGGTGG26590.10633018501612149No Hit
GTGTGG26560.10621021865468921No Hit
AGTGGT26480.10589030835753656No Hit
TTTTGT26150.10457067838178175No Hit
TTGTTT25880.10349098112889146No Hit
GGTTGT25790.1031310820445947No Hit
CTTGGG25750.10297112689601835No Hit
GCTGGG25720.10285116053458611No Hit
TGGGGT25660.10261122781172159No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)