FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000117
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT474701.186715288577809No Hit
GGGGGG175530.4388121647441812No Hit
GGGGGT106940.26734218024122797No Hit
GGGTGG93000.23249319957391246No Hit
TGGGGG83700.20924387961652122No Hit
AGGGGG78420.19604426570522812No Hit
GGGGTG75650.18911946825555354No Hit
GCGGGG74640.18659454210964327No Hit
GTGGGG71460.17864477464034176No Hit
GGCGGG71410.17851977829648483No Hit
GGGGGA71000.1774948082768579No Hit
GGGCGG70040.1750948784748046No Hit
CGGGGG69120.17279494574783685No Hit
GGTGGG68470.17116999327769664No Hit
GGGGGC67730.1693200473886139No Hit
GAGGGG66930.16732010588690283No Hit
GGGGAG61730.1543204861257808No Hit
GGGAGG61410.1535205095250964No Hit
GGGGCG57500.1437457954354835No Hit
GGTTGG57120.14279582322217077No Hit
GGAGGG53490.13372108865815674No Hit
GGGTGT52200.13049618298664764No Hit
TGGTGG49020.12254641551734612No Hit
TGGGGT48180.1204464769405495No Hit
GGTGTG47910.119771496683722No Hit
GGGGTT47240.11809654567603897No Hit
GTGGGT46500.11624659978695623No Hit
GGGCGT45020.11254670800879074No Hit
CGGGGT45020.11254670800879074No Hit
GGGTTG44740.11184672848319187No Hit
AGGGGT43380.10844682793028303No Hit
TTGGGG42890.107221863760485No Hit
AGAGGG42310.10577190617174446No Hit
GTGTGG42090.10522192225877393No Hit
GGTAGG41450.10362196905740508No Hit
TGGCGG40980.10244700342514981No Hit
AGGTGG40800.10199701658726482No Hit
GTGGTG40150.10037206411712457No Hit
GTGGGA40080.10019706923572486No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)