FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6443464
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT531110.8242616083522777No Hit
GGGGGG245620.3811924765933355No Hit
GGGGGT138080.21429467131344257No Hit
GTGGGG130090.20189450891632202No Hit
GGGCGG126940.19700583412897163No Hit
GGTGGG123350.1914342968316421No Hit
GCGGGG121910.1891994740717105No Hit
GGGGTG119250.18507125980683684No Hit
GGGGGC117650.1825881234069128No Hit
CGGGGG115460.1791893304595168No Hit
GGGGCG107170.16632357998741049No Hit
GGCGGG105900.1643525904699708No Hit
GAGGGG102140.15851721993014936No Hit
GGGTGG100140.15541329943024434No Hit
TGGGGG99640.1546373193052681No Hit
AGGGGG98350.15263529058282935No Hit
ATCTCG95520.14824324307546377No Hit
GGGGGA92940.14423918563058627No Hit
GGGAGG86440.13415144400589496No Hit
GGAGGG83350.1293558868335417No Hit
GGTTGG80460.12487072171117897No Hit
GGTGGT80360.12471552568618371No Hit
GTGGGT77680.12055627221631098No Hit
GGGGAG76810.1192060667988523No Hit
GGGTGT73220.1136345295015228No Hit
GGCCGG73120.11347933347652753No Hit
GCCGGG72770.11293614738904416No Hit
GGGGTT70910.11004950132413249No Hit
GCGGGT68060.10562641461176785No Hit
CCGGGG67880.10534706176677638No Hit
GGGCGT67850.1053005029592778No Hit
AGGGGT66860.10376406231182482No Hit
ATGGGG65500.1016533963718894No Hit
TGGGGT65470.10160683756439083No Hit
TGTGGG65340.10140508273189701No Hit
GGTGTG64460.1000393577119388No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)