FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2899965
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG267900.9238042528099477No Hit
GGGGGT131410.4531434000065518No Hit
GCAATT125880.43407420434384547No Hit
GGGTGG114010.39314267585988105No Hit
GGGGTG111870.3857632764533365No Hit
AGGGGG107180.36959066747357294No Hit
GTGGGG105630.3642457753800477No Hit
TGGGGG103400.35655602740033066No Hit
GGAGGG100370.34610762543685875No Hit
GGTGGG97850.33741786538803054No Hit
GCGGGG90750.3129348112822051No Hit
GGCGGG89490.30858993125779105No Hit
GGGGAG86500.2982794619935068No Hit
GGGCGG85180.2937276829203111No Hit
CGGGGG84650.2919000746560734No Hit
GGGGGA82730.2852793050950615No Hit
GGGGGC75450.2601755538428912No Hit
GGGGCG75400.26000313796890656No Hit
GGGAGG73330.25286512078594053No Hit
GAGGGG68820.23731320895252184No Hit
GGGTGT59970.2067955992572324No Hit
GTGTGG57910.19969206524906336No Hit
GGTGGT53540.1846229178628018No Hit
CGGTGG53470.18438153563922324No Hit
TGGGGT53450.18431256928962936No Hit
GGGCGT53430.18424360294003547No Hit
GGGGTT52880.18234702832620395No Hit
TGGTGG52030.17941595846846428No Hit
AGGGGT51560.17779524925300821No Hit
GTGGGT51310.17693316988308477No Hit
ATGGGG50560.1743469317733145No Hit
GGGTTG49570.1709330974684177No Hit
AGGTGG49050.169139972378977No Hit
GGTTGG48790.16824340983425662No Hit
GGGGCT48590.16755374633831788No Hit
GTTGGG48410.16693304919197302No Hit
GGGGTA47120.1624847196431681No Hit
GCGGGT46300.15965709930981925No Hit
AGGGTG46020.15869157041550502No Hit
GGTGTG46000.15862260406591114No Hit
TTGGGG45820.15800190691956625No Hit
TGGCGG45390.15651913040329796No Hit
GGAGGT45170.15576050055776536No Hit
TGGGTG44470.15334667832197973No Hit
GTGGAG44370.1530018465740104No Hit
AGTGGG44130.15217425037888388No Hit
GTGGTG44030.1518294186309145No Hit
GGGGCA43970.15162251958213288No Hit
CTGGGG42790.14755350495609432No Hit
GGCTGG42430.14631211066340455No Hit
GAGGTG40890.14100170174467624No Hit
CGGGTG40500.1396568579275957No Hit
GTCGGG40470.13955340840320485No Hit
GCGTGG40130.138380980460109No Hit
GGGCGC40090.13824304776092125No Hit
TGTGGG40030.13803614871213962No Hit
TCGGGG39540.1363464731470897No Hit
CCGGGG39460.1360706077487142No Hit
GGGTAG39440.13600164139912035No Hit
GGAGAG39260.13538094425277544No Hit
GAGGGT38990.13444989853325814No Hit
CGGGGT38960.13434644900886736No Hit
GGGGAT38510.13279470614300518No Hit
GAAGGG38500.13276022296820825No Hit
GGTCGG38340.13220849217145725No Hit
GTAGGG38320.13213952582186336No Hit
GGATGG38320.13213952582186336No Hit
GGGCCG38070.13127744645193992No Hit
GGGAGT37950.1308636483543767No Hit
AAGGGG37730.13010501850884407No Hit
GTGCGG37550.1294843213624992No Hit
GGCGGT37540.12944983818770225No Hit
GGGGAA37470.1292084559641237No Hit
TGCGGG37290.12858775881777884No Hit
GGGTGA37010.1276222299234646No Hit
TGGGGC36940.12738084769988603No Hit
GGCGCG36870.12713946547630747No Hit
GTGGGC36610.1262429029315871No Hit
GCGGTG36110.12451874419174025No Hit
GGCGGA36070.12438081149255249No Hit
TGGAGG36020.12420839561856781No Hit
GGTAGG35960.1240014965697862No Hit
AGAGGG35950.12396701339498924No Hit
GCTGGG35870.12369114799661377No Hit
GCGCGG35780.12338079942344131No Hit
AGCGGG35710.12313941719986277No Hit
GGTGGC35580.12269113592750258No Hit
GGCAGG35070.12093249401285877No Hit
GGGATG34990.12065662861448327No Hit
TGGGGA34890.1203117968665139No Hit
GGGGTC34880.12027731369171697No Hit
GGGAAG34810.1200359314681384No Hit
GCCGGG34720.11972558289496597No Hit
GAGAGG34700.1196566165453721No Hit
GAGTGG34690.11962213337057516No Hit
GGGTCG33940.11703589526080486No Hit
GTGTGT33860.11676002986242937No Hit
GTGTTG33840.11669106351283551No Hit
GGTGGA33680.1161393327160845No Hit
GAGCGG33510.11555311874453657No Hit
GTGGGA33480.11544966922014577No Hit
GGTGAG33400.11517380382177027No Hit
GGGGAC33240.11462207302501927No Hit
GTGGCG33240.11462207302501927No Hit
GGGGCC33050.11396689270387747No Hit
GGCCGG32690.11272549841118772No Hit
CGCGGG32620.11248411618760916No Hit
GCGAGG32520.1121392844396398No Hit
CGTGGG32480.11200135174045205No Hit
GGGAGC32460.11193238539085816No Hit
GATGGG32350.11155307046809186No Hit
GGGCTG32110.11072547427296536No Hit
GGAGGA32090.11065650792337149No Hit
CGGGGC32030.11044960887458986No Hit
TGGGAG31990.1103116761754021No Hit
GGGTGC31840.10979442855344806No Hit
AGGGAG31840.10979442855344806No Hit
GGAGTG31440.10841510156157058No Hit
GTGGTT31410.10831165203717975No Hit
ACGGGG31220.10765647171603795No Hit
TGGTGT31170.10748405584205326No Hit
ATGGTG30790.10617369519976966No Hit
AGGGGA30670.1057598971022064No Hit
GGGCAG30430.1049323009070799No Hit
GGCGGC30390.10479436820789217No Hit
TGAGGG30030.10355297391520242No Hit
GGCGAG29940.10324262534202999No Hit
TAGGGG29900.10310469264284224No Hit
TGTGGT29870.10300124311845144No Hit
TGGGCG29800.10275986089487286No Hit
TAGTGG29690.10238054597210655No Hit
GCAGGG29680.10234606279730962No Hit
TGGTTG29670.10231157962251268No Hit
AGGGGC29500.10172536565096475No Hit
GTGAGG29430.10148398342738618No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)