FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32756000
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG2344650.7157925265600196No Hit
GGGGGT1149900.3510501892783002No Hit
TGGGGG1051290.3209457809256319No Hit
GGGTGG1021260.31177799487116864No Hit
GTGGGG950950.29031322505800466No Hit
AGGGGG939320.2867627304921236No Hit
CGGGGG925580.282568079130541No Hit
GGGGTG912270.2785047014287459No Hit
GGTGGG827270.2525552570521431No Hit
GGGGGC822830.25119978019294176No Hit
GGGGAG803340.24524972524117716No Hit
GGGCGG801000.24453535230186835No Hit
GGGGCG793570.24226706557577238No Hit
GCGGGG784980.23964464525583098No Hit
GAGGGG784370.23945841983148125No Hit
GGCGGG783950.23933019904750275No Hit
GGGGGA767800.23439980461594823No Hit
GGAGGG720960.2201001343265356No Hit
GGGAGG719260.21958114543900353No Hit
GGGTGT593060.18105385272927096No Hit
GGGGTT563090.17190438392966173No Hit
TGGGGT555980.16973378922945415No Hit
GTGGGT532890.16268469898644522No Hit
TGGTGG520080.15877396507510075No Hit
GTGTGG515020.15722920991574063No Hit
GGGTTG495120.15115398705580657No Hit
AGGGGT488630.14917267065575773No Hit
TGGGTG486770.1486048357552815No Hit
CGGGGT479870.14649835144706314No Hit
TTGGGG478440.1460617902063744No Hit
GGTGGT464270.14173586518500428No Hit
GGGGTA459530.14028880205153255No Hit
GTGGTG455030.1389150079374771No Hit
TGTGGG451050.13769996336549029No Hit
GGGGCT450960.1376724874832092No Hit
GGTTGG448940.13705580656978875No Hit
AGGTGG448460.13690926853095617No Hit
GGGTAG445500.13600561729148858No Hit
GGGGAT445310.13594761265111735No Hit
TAGGGG439460.13416168030284528No Hit
GGCGGT432980.13218341677860543No Hit
GAGGGT423470.12928013188423496No Hit
ATGGGG417040.12731713273904016No Hit
GGGCGT413320.12618146293808769No Hit
GGAGGT406010.12394981072169985No Hit
GCGGGT399920.12209060935401148No Hit
GGTGTG397330.12129991451947734No Hit
TCGGGG397200.1212602271339602No Hit
CGGTGG396690.12110453046770056No Hit
GTTGGG396300.1209854683111491No Hit
CTGGGG390760.1192941751129564No Hit
GCGTGG386700.1180547075344975No Hit
AGGGTG386530.11800280864574428No Hit
GGGAGT383070.1169465136158261No Hit
GTAGGG381920.1165954328977897No Hit
GGATGG381870.11658016851874467No Hit
TGCGGG376950.11507815362071072No Hit
TGGAGG374410.11430272316522164No Hit
GGGTGA372070.11358835022591281No Hit
TGAGGG370930.11324032238368544No Hit
GGGATG368650.11254426669923068No Hit
AAGGGG368420.1124740505556234No Hit
TGGCGG368420.1124740505556234No Hit
TGGGGA367810.11228782513127365No Hit
AGTGGG367790.11228171937965564No Hit
GGCTGG365780.11166809134204421No Hit
TGGGAG362650.11071254121382341No Hit
GGGTCG362040.11052631578947368No Hit
CGGGTG361300.11030040297960678No Hit
GAGTGG359510.10975393820979362No Hit
GTGAGG359430.10972951520332153No Hit
GAGGTG357730.10921052631578947No Hit
TGGGCG356540.10884723409451703No Hit
CAGGGG352770.10769629991451948No Hit
TGGGGC351910.10743375259494445No Hit
GTCGGG349780.10678349004762486No Hit
GTGGAG349620.10673464403468066No Hit
GGGTGC349410.10667053364269141No Hit
GGGGTC347490.1060843814873611No Hit
GGTAGG346920.10591036756624742No Hit
ACGGGG344090.105046403712297No Hit
GGGCAG341280.10418854560996459No Hit
GTGTGT340550.10396568567590671No Hit
CGCGGG340310.1038924166564904No Hit
AGAGGG334890.10223775796800585No Hit
CGTGGG332840.10161191842715839No Hit
GGGTTT332240.10142874587861767No Hit
GTGGCG332110.10138905849310051No Hit
TGGTGT330690.10095555012822079No Hit
GGCGTG328740.10036023934546343No Hit
GGTGAG328610.10032055195994627No Hit
GGTCGG328100.10016485529368666No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)