FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11886709
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG657070.5527770554490734No Hit
GGGGGT376920.3170936547702144No Hit
GGGTGG335100.28191150300726636No Hit
GTGGGG322620.2714123816777209No Hit
GGGGTG313240.2635212151656106No Hit
TGGGGG313200.26348756413570823No Hit
GGTGGG294250.24754538871945125No Hit
AGGGGG261030.21959820838551697No Hit
GGGCGG249310.2097384566241169No Hit
CGGGGG247930.20857749609248447No Hit
GGGGGA245940.20690335735484058No Hit
GGGTGT227730.1915837259917779No Hit
GGGGTT224140.18856354605803843No Hit
GGGGCG220650.18562749369905496No Hit
GGGAGG219610.18475256692159286No Hit
GTGGGT217320.18282604545968106No Hit
GGGGAG217230.18275033064240068No Hit
GCGGGG216500.18213619934668207No Hit
GGGGGC215500.18129492359912233No Hit
GGAGGG214180.1801844396123435No Hit
GTGTGG210380.17698759177161652No Hit
GAGGGG207940.17493487894757076No Hit
GGCGGG204300.17187263522645332No Hit
TTGGGG202360.17024056027618747No Hit
GGTGGT199190.1675737161564231No Hit
GGGTTG196920.16566402020946253No Hit
TGGTGG196730.16550417781742616No Hit
TGGGGT190240.1600442982157635No Hit
GGTTGG182760.1537515556240167No Hit
TGTGGG180560.1519007489793853No Hit
GTGGTG179970.15140439628832505No Hit
GTTGGG179850.15130344319861788No Hit
GGGGCT168390.14166242313158334No Hit
GGTGTG161740.13606793941031115No Hit
TGGGTG157390.1324083899084263No Hit
AGGGGT152330.12815153462577406No Hit
GGGGAT145580.12247292332974585No Hit
ATGGGG144740.12176625170179568No Hit
GGGTAG143170.12044544877812689No Hit
CGGGGT142100.11954528372823797No Hit
GCGGGT141990.11945274339600642No Hit
GGGTCG141580.11910782033950691No Hit
TGGTGT139740.11755987296399702No Hit
GGGTTT138460.11648304000712055No Hit
GGGAGT138120.11619700625295024No Hit
GTGGCG138110.11618859349547465No Hit
TTGTGG137980.1160792276482919No Hit
GTCGGG137150.11538096877781731No Hit
AGGTGG136840.11512017329607378No Hit
GGGCGT136530.11485937781433027No Hit
GGGTGA136160.11454810578773317No Hit
GGGGTA135490.11398445103686815No Hit
GTGTGT135080.11363952798036867No Hit
CTGGGG134690.11331143043882036No Hit
GGAGGT134630.11326095389396677No Hit
CGGTGG134480.11313476253183281No Hit
GAGGGT133650.11243650366135824No Hit
TTGGGT133170.11203269130252959No Hit
GTTTGG132480.11145221103671335No Hit
TAGGGG132020.11106522419283588No Hit
GGGCTG130650.10991267641867904No Hit
GTAGGG129420.10887790724918057No Hit
GGGTGC128430.10804504425909645No Hit
GTTGGT128190.10784313807968211No Hit
GTGAGG128110.10777583601987732No Hit
TTTGGG128000.10768329568764576No Hit
GTGGTT127680.10741408744842663No Hit
AGGGTG127210.10701868784707357No Hit
GGCGGT127100.10692614751484199No Hit
GGTTGT126830.10669900306300086No Hit
GGTAGG126750.10663170100319609No Hit
TGAGGG126720.1066064627307693No Hit
TGGGGA125050.10520153223234453No Hit
GTGCGG124920.10509216638516178No Hit
GTGGAG124810.1049996260529302No Hit
GGTCGG124530.10476406884361347No Hit
TGTGGT124100.1044023202721628No Hit
GGTGGA123720.1040826354880901No Hit
GGAGTG120270.10118023415900902No Hit
TGGCGG120150.10107928106930185No Hit
AGTGGG119940.1009026131623143No Hit
GGGGTC119510.10054086459086362No Hit
GTGTTG119080.10017911601941294No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)