FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9739380
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG386770.3971197345210886No Hit
GGGGGT253450.2602321708363366No Hit
GGGTGG224190.2301891906877029No Hit
GGGGTG223250.22922403684834147No Hit
GTGGGG222330.22827941819705153No Hit
GGTGGG218370.22421345095889061No Hit
TGGGGG209850.21546546084042312No Hit
GCGGGG186840.1918397269641394No Hit
AGGGGG174390.17905657238961825No Hit
GGGCGG163000.16736178278288763No Hit
GGCGGG161000.16530826397573561No Hit
CGGGGG160510.1648051518679834No Hit
GTGGGT159040.16329581554472666No Hit
GGGGAG152070.15613930250180197No Hit
GGGGGC150720.15475317730697435No Hit
GGGGCG149320.15331571414196796No Hit
GAGGGG149010.1529974187268594No Hit
GGTGGT147710.15166263150221063No Hit
GGGAGG144380.14824352268830254No Hit
GGAGGG143350.14718596050261926No Hit
GGGGTT143330.14716542531454774No Hit
GGGTGT141880.14567662417936256No Hit
GGGGGA141270.14505030094318117No Hit
GGGTTG136680.14033747528076737No Hit
GTGTGG135250.13886920933365368No Hit
GTTGGG129200.1326573149420189No Hit
GGTTGG128650.1320925972700521No Hit
TTGGGG125570.12893017830703804No Hit
GTGGTG121970.12523384445416444No Hit
TGGGGT120900.12413521189233812No Hit
TGTGGG118580.12175313007604181No Hit
GCGGGT115430.11851883795477741No Hit
GGTGTG114750.11782064156034572No Hit
TGGTGG114520.11758448689752327No Hit
TGGGTG108530.11143419807010302No Hit
GTGTTG108460.1113623249118527No Hit
GGGCGT107590.1104690442307416No Hit
GTGTGT106450.10929853851066496No Hit
GTCGGG104320.10711154098104808No Hit
GGGTAG102860.10561247225182713No Hit
GGTTGT102820.10557140187568409No Hit
GAGGGT102810.10556113428164832No Hit
GGGGCT102350.10508882495600337No Hit
AGGGGT101740.104462501719822No Hit
GTTGGT101450.10416474149278496No Hit
GTAGGG101020.10372323494924729No Hit
TGTGGT100050.10272727832777856No Hit
GCTGGG99980.10265540516952824No Hit
GGAGGT99240.10189560321088201No Hit
AGTGGG99220.10187506802281049No Hit
GTGGTT98950.10159784298384496No Hit
ATGGGG98580.10121794200452185No Hit
GGGGTC98520.10115633644030729No Hit
TGAGGG98300.10093044937152056No Hit
GGCTGG98270.10089964658941328No Hit
GTGGCG97990.10061215395641201No Hit
GGTGTT97430.10003716869040945No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)