FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8607435
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG271510.3154365963844049No Hit
GGGGGT191040.22194765339500094No Hit
TGGGGG190020.22076263137624624No Hit
GTGGGG161240.1873264218666769No Hit
GGGTGG154540.17954245370426844No Hit
GGGGTG154510.17950760011548156No Hit
AGGGGG147920.17185142844529178No Hit
GGTGGG140250.16294052757877348No Hit
GGGGTT138570.16098872660670688No Hit
GGGCGG128200.14894100274936725No Hit
CGGGGG123480.14345737144689444No Hit
GGGAGG122840.1427138282194405No Hit
GGGTGT122430.14223749583935283No Hit
TGGTGG118730.13793888655563474No Hit
GGGGGC116440.13527839594490113No Hit
GGGGAG114750.13331497710990556No Hit
GGTGGT114070.13252496243073575No Hit
GAGGGG112680.13091007948360922No Hit
GCGGGG112170.13031756847423187No Hit
GGCGGG111960.13007359335272356No Hit
GGGGCG111340.12935328585112754No Hit
TTGGGG109260.12693677036190223No Hit
GGGTTG108940.12656499874817526No Hit
TGTGGG108760.12635587721545385No Hit
GTGGTG108390.12592601628708205No Hit
TGGGGT107830.12527541596305986No Hit
GGTTGG107620.12503144084155152No Hit
GTGGGT107570.12497335152690668No Hit
GGGGGA106710.12397421531501546No Hit
TGGGTG105920.123056404143627No Hit
GGAGGG105760.12287051833676352No Hit
GTGTGG101930.11842087683496882No Hit
GTAGGG97370.11312313133935953No Hit
GGAGGT94140.10937056161330291No Hit
GTTGGG93980.10918467580643942No Hit
GGGTAG93400.10851083975655931No Hit
TGGTTG92770.10777891439203433No Hit
ATGGGG91560.10637315297762923No Hit
AGGGGT91300.10607108854147607No Hit
GTGTGT88660.10300397272822856No Hit
GGGCGT88230.10250440462228295No Hit
GGTGTG87620.10179571498361589No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)