FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5396276
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG198560.36795745806923147No Hit
GGGGGT116200.2153336856750841No Hit
GTGGGG99170.18377488475385617No Hit
GGTGGG96660.17912352889288835No Hit
TGGGGG95020.17608439597974604No Hit
GGGTGG92650.17169247829429035No Hit
GAGGGG91130.16887572096015846No Hit
GGGAGG90740.1681530003283746No Hit
GGGGAG89560.1659663071347722No Hit
GCGGGG88530.16405758341493282No Hit
CGGGGG84210.15605206257055793No Hit
GGCGGG82890.15360593120144336No Hit
AGGGGG82300.15251258460464218No Hit
GGGCGG81500.15103008074457275No Hit
GGGGTG78070.14467384544452508No Hit
GGGGGA77880.1443217507777586No Hit
GGGTGT74190.13748370172318836No Hit
GGGGCG72090.13359212909050613No Hit
GGGGGC70240.13016383891409558No Hit
GGAGGG69120.12808833350999838No Hit
TTGGGG66990.12414116698256353No Hit
TGCAAT65210.12084259589390907No Hit
TGGTGG64530.11958246761285005No Hit
GGTGGT63520.1177108064895124No Hit
GGGGTT62770.1163209591206973No Hit
TGTGGG62750.11628389652419559No Hit
ATGGGG62520.11585767666442562No Hit
ATCTCG62300.11544998810290652No Hit
AGTGGG61610.11417132852359665No Hit
GTGAGG61480.11393042164633536No Hit
GAGGGT60030.11124338339995953No Hit
GGGGTA59640.1105206627681757No Hit
TGGGGT59230.1097608795398901No Hit
TGCGGG58100.10766684283754205No Hit
GTTGGG57650.106832934416253No Hit
TGGGGC57220.10603608859146567No Hit
AGGTGG57120.10585077560895699No Hit
AGGGGT56500.10470183511740319No Hit
TGGCGG55650.10312667476607942No Hit
GGAGGT55040.10199626557277647No Hit
GGGTAG54900.10173682739726435No Hit
GGGGAT54690.1013476701339961No Hit
GGGCCG54580.10114382585323656No Hit
GGGGCT54440.10088438767772441No Hit
GTGGGT54280.10058788690571054No Hit
GCGGGT54000.10006901055468623No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)