FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4434053
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG91370.20606429377366484No Hit
GGTGGG72950.16452216516130955No Hit
GGGGTG68060.15349388020395788No Hit
GGGGGT64090.14454044640422659No Hit
GTGGGT60420.13626359450371928No Hit
GTGGGG60060.13545169622465045No Hit
GGGTGG57310.12924969548176352No Hit
GGTGGT53830.1214013454507648No Hit
GGGTGT52790.11905586153345482No Hit
GTGGTG52380.11813119960451532No Hit
TGGGGG51590.11634953393655871No Hit
GTGTGG50950.11490615921821412No Hit
TTGGGG50320.11348533722984368No Hit
GGGGTT50140.11307938809030926No Hit
TGGTGG49940.11262833349082657No Hit
GGGGGA49810.11233514800116282No Hit
GGTTGG49400.11141048607222331No Hit
TTTTTT49200.11095943147274062No Hit
TTGTTT49010.11053092960323208No Hit
TGTGGG47880.1079824711161549No Hit
TTGGTT46920.10581740903863801No Hit
AGGGGG45890.1034944778513022No Hit
TGGGTG45630.1029081068719747No Hit
GGGTTG45520.10266002684225922No Hit
GGGGCG45350.10227663043269894No Hit
TTTGTT45230.10200599767300933No Hit
GAGGGG44660.10072049206448366No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)