FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14043179
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG369840.263359172449486No Hit
TGGGGG216530.15418873461628596No Hit
GGGTGG211700.15074934243877403No Hit
GGGGGT210990.15024375890957453No Hit
GGTGGG206300.14690405925894698No Hit
GGGGTG200770.14296620444701302No Hit
CGGGGG196990.14027450622113413No Hit
GTGGGG193420.1377323467855818No Hit
AGGGGG186710.13295422638990786No Hit
GGGCGG185490.13208547722705805No Hit
GGGGCG174680.12438778997262658No Hit
GCGGGG173890.12382523928520742No Hit
GGGGGC167130.1190115144156462No Hit
GGAGGG163320.11629845350543491No Hit
GGGGAG162430.11566469387024121No Hit
GAGGGG159380.11349282096311669No Hit
GGCGGG156630.1115345748993159No Hit
GGTTGG153740.10947663630863069No Hit
GGGGGA152750.10877166772566241No Hit
GGTGGT152320.10846546925023172No Hit
TGGGGT151780.10808094093224903No Hit
TGTGGG149120.10618678292144536No Hit
GGGTTG145130.10334554590523982No Hit
GTGGGT141740.10093156257568177No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)