FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24041385
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1103920.4591748769881602No Hit
GGGGGT606850.2524189018228359No Hit
CGGGGG524990.21836928280130286No Hit
GTGGGG506700.21076156802114354No Hit
GGGTGG501620.20864854499855146No Hit
GGTGGG482020.2004959364861883No Hit
TGGGGG481160.20013821999023768No Hit
GGGCGG472080.19636139931206126No Hit
GAGGGG469170.1951509865176237No Hit
GGGGGC458110.19055058599993302No Hit
GGCGGG445790.18542608922073334No Hit
GGGGTG437160.18183644577881017No Hit
GCGGGG436560.18158687613047253No Hit
GGGGGA424050.17638334896263255No Hit
GGAGGG419570.17451989558837813No Hit
GGGGCG404680.1683264088154655No Hit
AGGGGG399860.16632153264048638No Hit
GGGGAG373660.15542365799640911No Hit
GGGAGG372870.1550950579594312No Hit
GGTGGT310540.12916893099128857No Hit
GGGGTT301730.12550441665486411No Hit
CGGGGT301260.12530892043033295No Hit
GGGTGT296340.12326244931396423No Hit
GTGGGT287810.11971440081343068No Hit
TGGGGT281620.11713967394141395No Hit
GGCGGT278390.11579615733452961No Hit
GGCCGG275420.11456078757525825No Hit
GTGTGG266470.11083804032088833No Hit
GGTTGG266330.11077980740294288No Hit
GCCGGG265520.11044288837768707No Hit
CGGTGG264910.11018915923521044No Hit
GCGGGT261300.1086875818510456No Hit
GAGGGT261200.108645986909656No Hit
GGGGCT258610.10756867792766514No Hit
TGGTGG258420.1074896475390249No Hit
TTGGGG257020.10690731835957037No Hit
GGGCGT253550.10546397389335099No Hit
CCGGGG253390.10539742198712762No Hit
TCGGGG251080.10443657884102768No Hit
GGCTGG250080.1040206294271316No Hit
CAGGGG249250.10367539141359783No Hit
GGGTTG246420.10249825457227194No Hit
GGAGGT245300.10203239122870834No Hit
CTGGGG242430.10083861641082659No Hit
GGTAGG241770.10056408979765517No Hit
TGTGGG241280.10036027458484609No Hit
GTTGGG240770.10014814038375908No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)